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    LOC101928622 uncharacterized LOC101928622 [ Homo sapiens (human) ]

    Gene ID: 101928622, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC101928622
    Gene description
    uncharacterized LOC101928622
    See related
    Ensembl:ENSG00000250954
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC101928622 in Genome Data Viewer
    Location:
    4p15.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (33896339..34039893, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (33865429..34008981, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (33897961..34041515, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900832 Neighboring gene NANOG hESC enhancer GRCh37_chr4:33382663-33383166 Neighboring gene uncharacterized LOC105374391 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:33494821-33496020 Neighboring gene NANOG hESC enhancer GRCh37_chr4:33524821-33525423 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:33743381-33744580 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:33748252-33749451 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:33847208-33847975 Neighboring gene uncharacterized LOC105374392 Neighboring gene NANOG hESC enhancer GRCh37_chr4:33997590-33998091 Neighboring gene ribosomal protein L31 pseudogene 31 Neighboring gene NANOG hESC enhancer GRCh37_chr4:34167190-34167706 Neighboring gene long intergenic non-protein coding RNA 2484 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:34182143-34183342 Neighboring gene Sharpr-MPRA regulatory region 11927 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:34514021-34514799 Neighboring gene uncharacterized LOC107986270

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125902.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016687, BC036345
      Related
      ENST00000505018.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      33896339..34039893 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      33865429..34008981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials