U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC100505716 uncharacterized LOC100505716 [ Homo sapiens (human) ]

    Gene ID: 100505716, updated on 10-Dec-2024

    Summary

    Gene symbol
    LOC100505716
    Gene description
    uncharacterized LOC100505716
    See related
    Ensembl:ENSG00000223522
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC100505716 in Genome Data Viewer
    Location:
    2p23.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (28307691..28310459, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (28351009..28353777, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (28530558..28533326, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene BRISC and BRCA1 A complex member 2 Neighboring gene uncharacterized LOC100505736 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28472667-28473167 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28487601-28488102 Neighboring gene uncharacterized LOC124907745 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15514 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:28498303-28499502 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:28532030-28533229 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:28542037-28543032 Neighboring gene ribosomal protein L23a pseudogene 34 Neighboring gene MPRA-validated peak3639 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:28562837-28563456 Neighboring gene uncharacterized LOC105374381 Neighboring gene uncharacterized LOC105374382 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:28582187-28583386 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28583785-28584472

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038319.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093690, BC041993
      Related
      ENST00000418963.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      28307691..28310459 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      28351009..28353777 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)