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    Samt1c spermatogenesis associated multipass transmembrane protein 1c [ Mus musculus (house mouse) ]

    Gene ID: 625650, updated on 27-Nov-2024

    Summary

    Official Symbol
    Samt1cprovided by MGI
    Official Full Name
    spermatogenesis associated multipass transmembrane protein 1cprovided by MGI
    Primary source
    MGI:MGI:3710528
    See related
    Ensembl:ENSMUSG00000096867 AllianceGenome:MGI:3710528
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm10057
    Expression
    Restricted expression toward testis adult (RPKM 22.6) See more
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    Genomic context

    See Samt1c in Genome Data Viewer
    Location:
    X F3; X 72.38 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (152826982..152838037, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (154043986..154055041, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated multipass transmembrane protein 1 Neighboring gene spermatogenesis associated multipass transmembrane protein 1b Neighboring gene predicted gene 15143 Neighboring gene predicted pseudogene 5947

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC625650

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243016.1NP_001229945.1  uncharacterized protein LOC625650

      See identical proteins and their annotated locations for NP_001229945.1

      Status: VALIDATED

      Source sequence(s)
      BX005465, BX322668
      Consensus CDS
      CCDS57781.1
      UniProtKB/TrEMBL
      A2BED8
      Related
      ENSMUSP00000116409.2, ENSMUST00000144098.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      152826982..152838037 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017318588.1XP_017174077.1  uncharacterized protein LOC625650 isoform X1