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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_198887.3 → NP_942590.1 nucleoporin Nup43
See identical proteins and their annotated locations for NP_942590.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the supproted protein.
- Source sequence(s)
-
AF514997, AK074311, BC046637, BC047539, BG527619, DC324759
- Consensus CDS
-
CCDS5218.1
- UniProtKB/Swiss-Prot
- B4E2F0, Q8NFH3, Q9H8S0
- UniProtKB/TrEMBL
-
B3KTT0
- Related
- ENSP00000342262.2, ENST00000340413.7
- Conserved Domains (2) summary
-
- sd00039
Location:78 → 133
- 7WD40; WD40 repeat [structural motif]
- cl29593
Location:73 → 294
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
RNA
-
NR_104456.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks a segment in the 3' region, compared to variant 1. This variant is represented as non-coding because the use of the expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AF514997, AK074311, AK095994, BC046637, DC324759
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000006.12 Reference GRCh38.p14 Primary Assembly
- Range
-
149724315..149749358 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047418728.1 → XP_047274684.1 nucleoporin Nup43 isoform X3
- UniProtKB/Swiss-Prot
- B4E2F0, Q8NFH3, Q9H8S0
- UniProtKB/TrEMBL
-
B3KTT0
-
XM_005266960.6 → XP_005267017.1 nucleoporin Nup43 isoform X2
See identical proteins and their annotated locations for XP_005267017.1
- UniProtKB/TrEMBL
-
B3KTT0
- Conserved Domains (3) summary
-
- COG2319
Location:72 → 309
- WD40; WD40 repeat [General function prediction only]
- sd00039
Location:78 → 133
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:73 → 309
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
XM_011535799.4 → XP_011534101.1 nucleoporin Nup43 isoform X4
- UniProtKB/TrEMBL
-
B3KTT0
- Conserved Domains (3) summary
-
- COG2319
Location:72 → 302
- WD40; WD40 repeat [General function prediction only]
- sd00039
Location:78 → 133
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:73 → 294
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
XM_005266962.5 → XP_005267019.1 nucleoporin Nup43 isoform X5
See identical proteins and their annotated locations for XP_005267019.1
- UniProtKB/TrEMBL
-
B3KTT0
- Conserved Domains (3) summary
-
- COG2319
Location:72 → 307
- WD40; WD40 repeat [General function prediction only]
- sd00039
Location:78 → 133
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:73 → 294
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
XM_011535798.4 → XP_011534100.1 nucleoporin Nup43 isoform X1
- UniProtKB/TrEMBL
-
B3KTT0
- Conserved Domains (3) summary
-
- COG2319
Location:72 → 302
- WD40; WD40 repeat [General function prediction only]
- sd00039
Location:78 → 133
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:73 → 294
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Alternate T2T-CHM13v2.0
Genomic
-
NC_060930.1 Alternate T2T-CHM13v2.0
- Range
-
150924084..150946307 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054355343.1 → XP_054211318.1 nucleoporin Nup43 isoform X2
- UniProtKB/TrEMBL
-
B3KTT0
-
XM_054355344.1 → XP_054211319.1 nucleoporin Nup43 isoform X4
- UniProtKB/TrEMBL
-
B3KTT0
-
XM_054355345.1 → XP_054211320.1 nucleoporin Nup43 isoform X5
- UniProtKB/TrEMBL
-
B3KTT0
-
XM_054355342.1 → XP_054211317.1 nucleoporin Nup43 isoform X1
- UniProtKB/TrEMBL
-
B3KTT0
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_024647.4: Suppressed sequence
- Description
- NM_024647.4: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.