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    tad3 tRNA-specific adenosine deaminase subunit Tad3 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2541987, updated on 18-Sep-2024

    Summary

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    Official Symbol
    tad3
    Official Full Name
    tRNA-specific adenosine deaminase subunit Tad3
    Primary source
    PomBase:SPAP27G11.04c
    Locus tag
    SPOM_SPAP27G11.04C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See tad3 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    2
    Sequence:
    Chromosome: I; NC_003424.3 (1614241..1615504, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene translation initiation factor eIF2 assembly protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene HOPS complex subunit Vps41 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Wobble inosine tRNA modification is essential to cell cycle progression in G(1)/S and G(2)/M transitions in fission yeast. Tsutsumi S, et al. J Biol Chem, 2007 Nov 16. PMID 17875641
    2. tRNA production links nutrient conditions to the onset of sexual differentiation through the TORC1 pathway. Otsubo Y, et al. EMBO Rep, 2018 Mar. PMID 29330317, Free PMC Article
    3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    4. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    contributes_to tRNA-specific adenosine-34 deaminase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    contributes_to tRNA-specific adenosine-34 deaminase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA wobble adenosine to inosine editing IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in tRNA wobble adenosine to inosine editing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of tRNA-specific adenosine-34 deaminase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA-specific adenosine deaminase subunit Tad3

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      1614241..1615504 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001018841.3 → NP_593408.1  tRNA-specific adenosine deaminase subunit Tad3 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_593408.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9P7N4
      Conserved Domains (1) summary
      COG0590
      Location:152 → 301
      TadA; tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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