U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    hht1 histone H3 h3.1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542467, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    hht1
    Official Full Name
    histone H3 h3.1
    Primary source
    PomBase:SPAC1834.04
    Locus tag
    SPOM_SPAC1834.04
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See hht1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (4699732..4700560)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene multifunctional aromatic polypeptide Aro1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene histone H4 h4.1 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Dynamic regulation of replication independent deposition of histone H3 in fission yeast. Choi ES, et al. Nucleic Acids Res, 2005. PMID 16361268, Free PMC Article
    2. The binding of Chp2's chromodomain to methylated H3K9 is essential for Chp2's role in heterochromatin assembly in fission yeast. Maksimov V, et al. PLoS One, 2018. PMID 30110338, Free PMC Article
    3. The Chp1 chromodomain binds the H3K9me tail and the nucleosome core to assemble heterochromatin. Zocco M, et al. Cell Discov, 2016. PMID 27462451, Free PMC Article
    4. The histone H3K9M mutation synergizes with H3K14 ubiquitylation to selectively sequester histone H3K9 methyltransferase Clr4 at heterochromatin. Shan CM, et al. Cell Rep, 2021 May 18. PMID 34010645, Free PMC Article
    5. Division of labor between the chromodomains of HP1 and Suv39 methylase enables coordination of heterochromatin spread. Al-Sady B, et al. Mol Cell, 2013 Jul 11. PMID 23849629, Free PMC Article

    See all (57) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The findings extend our understanding of epigenetic regulation during gametogenesis and support a link between Set7, the epigenetic H3K37 methyl mark, and proper gametogenesis.
      Title: Set7 Is a H3K37 Methyltransferase in Schizosaccharomyces pombe and Is Required for Proper Gametogenesis.
    2. Replication-independent deposition of histone H3 occurs preferentially at euchromatic regions.
      Title: Dynamic regulation of replication independent deposition of histone H3 in fission yeast.
    Submit: New GeneRIF Correction

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables DNA binding ISM
    Inferred from Sequence Model
    more info
    		  
    enables chromatin-protein adaptor activity EXP
    Inferred from Experiment
    more info
    		 PubMed 
    enables chromatin-protein adaptor activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA damage response IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in DNA damage response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in heterochromatin boundary formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in heterochromatin formation EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in mitotic sister chromatid biorientation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pericentric heterochromatin formation EXP
    Inferred from Experiment
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in heterochromatin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in mating-type region heterochromatin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of nucleosome ISM
    Inferred from Sequence Model
    more info
    		  
    is_active_in nucleus EXP
    Inferred from Experiment
    more info
    		 PubMed 
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in pericentric heterochromatin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in subtelomeric heterochromatin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    histone H3 h3.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      4699732..4700560
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001020112.3 → NP_594683.1  histone H3 h3.1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594683.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P09988, P10651
      Conserved Domains (2) summary
      PTZ00018
      Location:1 → 136
      PTZ00018; histone H3; Provisional
      pfam00125
      Location:1 → 132
      Histone; Core histone H2A/H2B/H3/H4
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.