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    5830417I10Rik RIKEN cDNA 5830417I10 gene [ Mus musculus (house mouse) ]

    Gene ID: 100302730, updated on 17-Aug-2024

    Summary

    Official Symbol
    5830417I10Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 5830417I10 geneprovided by MGI
    Primary source
    MGI:MGI:1923272
    See related
    AllianceGenome:MGI:1923272
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    3632445O20Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 15.1), CNS E14 (RPKM 10.8) and 28 other tissues See more
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    Genomic context

    See 5830417I10Rik in Genome Data Viewer
    Location:
    3 F1; 3 38.97 cM
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (88684364..88736678)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (88777057..88829371)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene 10253 Neighboring gene synaptotagmin XI Neighboring gene STARR-positive B cell enhancer ABC_E4551 Neighboring gene STARR-positive B cell enhancer ABC_E3444 Neighboring gene STARR-seq mESC enhancer starr_08218 Neighboring gene RIKEN cDNA 1500004A13 gene Neighboring gene STARR-seq mESC enhancer starr_08219 Neighboring gene STARR-positive B cell enhancer ABC_E10195 Neighboring gene STARR-seq mESC enhancer starr_08220 Neighboring gene gon-4 like Neighboring gene predicted gene, 23054 Neighboring gene predicted gene, 40091 Neighboring gene predicted gene, 53242

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028359.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC127377, AC134246

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      88684364..88736678
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)