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    Zscan30 zinc finger and SCAN domain containing 30 [ Mus musculus (house mouse) ]

    Gene ID: 328918, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Zscan30provided by MGI
    Official Full Name
    zinc finger and SCAN domain containing 30provided by MGI
    Primary source
    MGI:MGI:2685600
    See related
    AllianceGenome:MGI:2685600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm754; Zfp397os; C230097I24Rik
    Summary
    Orthologous to human ZSCAN30 (zinc finger and SCAN domain containing 30). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in CNS E14 (RPKM 5.3), whole brain E14.5 (RPKM 4.9) and 24 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Zscan30 in Genome Data Viewer
    Location:
    18 A2; 18 12.47 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (24065597..24120362, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (23932591..23987305, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein, RP/EB family, member 2 Neighboring gene predicted gene, 23207 Neighboring gene predicted gene, 38559 Neighboring gene STARR-seq mESC enhancer starr_44048 Neighboring gene STARR-seq mESC enhancer starr_44049 Neighboring gene predicted gene, 46611 Neighboring gene ribosomal protein L19, pseudogene 7 Neighboring gene zinc finger protein 397 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:24145637-24145876 Neighboring gene STARR-seq mESC enhancer starr_44051 Neighboring gene zinc finger protein 35 Neighboring gene zinc finger protein 24

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger and SCAN domain-containing protein 30
    Names
    zinc finger protein 397 opposite strand

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001370933.1 → NP_001357862.1  zinc finger and SCAN domain-containing protein 30 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC126807
      Conserved Domains (4) summary
      smart00431
      Location:44 → 154
      SCAN; leucine rich region
      COG5048
      Location:255 → 518
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:454 → 474
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:508 → 530
      zf-C2H2; Zinc finger, C2H2 type

    2. NM_001370934.1 → NP_001357863.1  zinc finger and SCAN domain-containing protein 30 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC126807
      Conserved Domains (4) summary
      smart00431
      Location:44 → 154
      SCAN; leucine rich region
      COG5048
      Location:255 → 518
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:454 → 474
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:508 → 530
      zf-C2H2; Zinc finger, C2H2 type

    3. NM_001370935.1 → NP_001357864.1  zinc finger and SCAN domain-containing protein 30 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC126807
      Conserved Domains (4) summary
      smart00431
      Location:44 → 154
      SCAN; leucine rich region
      COG5048
      Location:255 → 518
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:454 → 474
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:508 → 530
      zf-C2H2; Zinc finger, C2H2 type

    4. NM_001370936.1 → NP_001357865.1  zinc finger and SCAN domain-containing protein 30 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC126807
      Conserved Domains (2) summary
      COG5048
      Location:112 → 375
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:311 → 331
      ZF_C2H2; C2H2 Zn finger [structural motif]

    5. NM_001370937.1 → NP_001357866.1  zinc finger and SCAN domain-containing protein 30 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC126807
      Conserved Domains (1) summary
      cl02605
      Location:44 → 154
      SCAN; SCAN oligomerization domain

    RNA

    1. NR_163795.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC126807

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      24065597..24120362 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036161178.1 → XP_036017071.1  zinc finger and SCAN domain-containing protein 30 isoform X2

      Conserved Domains (1) summary
      cl02605
      Location:44 → 154
      SCAN; SCAN oligomerization domain

    2. XM_017318022.3 → XP_017173511.2  zinc finger and SCAN domain-containing protein 30 isoform X1

      Conserved Domains (2) summary
      COG5048
      Location:112 → 375
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:311 → 331
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_011247055.3 → XP_011245357.1  zinc finger and SCAN domain-containing protein 30 isoform X1

      See identical proteins and their annotated locations for XP_011245357.1

      Conserved Domains (2) summary
      COG5048
      Location:112 → 375
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:311 → 331
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. XM_011247054.2 → XP_011245356.1  zinc finger and SCAN domain-containing protein 30 isoform X1

      See identical proteins and their annotated locations for XP_011245356.1

      Conserved Domains (2) summary
      COG5048
      Location:112 → 375
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:311 → 331
      ZF_C2H2; C2H2 Zn finger [structural motif]

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001080810.1: Suppressed sequence

      Description
      NM_001080810.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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