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    9330179D12Rik RIKEN cDNA 9330179D12 gene [ Mus musculus (house mouse) ]

    Gene ID: 77558, updated on 22-Oct-2024

    Summary

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    Official Symbol
    9330179D12Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 9330179D12 geneprovided by MGI
    Primary source
    MGI:MGI:1924808
    See related
    Ensembl:ENSMUSG00000097166 AllianceGenome:MGI:1924808
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in cortex adult (RPKM 1.1), bladder adult (RPKM 1.0) and 21 other tissues See more
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    Genomic context

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    See 9330179D12Rik in Genome Data Viewer
    Location:
    6 F3; 6 61.92 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (127126352..127189382)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (127149389..127212419)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor 23 Neighboring gene STARR-seq mESC enhancer starr_17405 Neighboring gene Trp53 induced glycolysis regulatory phosphatase Neighboring gene STARR-positive B cell enhancer ABC_E2208 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:127059715-127059898 Neighboring gene STARR-seq mESC enhancer starr_17406 Neighboring gene cyclin D2 Neighboring gene STARR-positive B cell enhancer ABC_E2805 Neighboring gene STARR-positive B cell enhancer ABC_E9676 Neighboring gene STARR-seq mESC enhancer starr_17407 Neighboring gene eukaryotic translation elongation factor 1 gamma pseudogene Neighboring gene triosephosphate isomerase related sequence 11 Neighboring gene STARR-positive B cell enhancer ABC_E440 Neighboring gene STARR-positive B cell enhancer ABC_E2806 Neighboring gene STARR-positive B cell enhancer ABC_E2209 Neighboring gene STARR-seq mESC enhancer starr_17408 Neighboring gene VISTA enhancer mm1531 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E4866 Neighboring gene STARR-seq mESC enhancer starr_17411 Neighboring gene STARR-positive B cell enhancer ABC_E6492 Neighboring gene calmodulin 2 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
    2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040273.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC161597, AK020388, CX238860
      Related
      ENSMUST00000363535.1

    2. NR_040274.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon and uses an alternate exon in the 5' region, compared to variant 1.
      Source sequence(s)
      AC161597, AK043994
      Related
      ENSMUST00000180811.4

    3. NR_040275.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an internal exon, compared to variant 1.
      Source sequence(s)
      AC161597, AK020388
      Related
      ENSMUST00000180569.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      127126352..127189382
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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