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    SNORD22 small nucleolar RNA, C/D box 22 [ Homo sapiens (human) ]

    Gene ID: 9304, updated on 10-Dec-2024

    Summary

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    Official Symbol
    SNORD22provided by HGNC
    Official Full Name
    small nucleolar RNA, C/D box 22provided by HGNC
    Primary source
    HGNC:HGNC:10145
    See related
    Ensembl:ENSG00000277194 MIM:603223; AllianceGenome:HGNC:10145
    Gene type
    snoRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    U22; RNU22
    Summary
    Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See SNORD22 in Genome Data Viewer
    Location:
    11q12.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (62852910..62853035, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (62842305..62842430, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (62620382..62620507, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4853 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4854 Neighboring gene STX5 divergent transcript Neighboring gene testis expressed 54 Neighboring gene WD repeat domain 74 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4855 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4856 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4857 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4858 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4859 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3432 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:62608631-62609244 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:62609245-62609858 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:62609859-62610472 Neighboring gene RNA, U2 small nuclear 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4862 Neighboring gene small nucleolar RNA host gene 1 Neighboring gene small nucleolar RNA, C/D box 31 Neighboring gene small nucleolar RNA, C/D box 30

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Requirement for intron-encoded U22 small nucleolar RNA in 18S ribosomal RNA maturation. Tycowski KT, et al. Science, 1994 Dec 2. PMID 7985025
    2. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. Frey MR, et al. Histochem Cell Biol, 1997 Oct-Nov. PMID 9387929
    3. A mammalian gene with introns instead of exons generating stable RNA products. Tycowski KT, et al. Nature, 1996 Feb 1. PMID 8559254
    4. The deubiquitinase USP36 promotes snoRNP group SUMOylation and is essential for ribosome biogenesis. Ryu H, et al. EMBO Rep, 2021 Jun 4. PMID 33852194, Free PMC Article
    5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. Dieci G, et al. Genomics, 2009 Aug. PMID 19446021

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • RNA, U22 small nucleolar

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_000008.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP001160
      Related
      ENST00000384756.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      62852910..62853035 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      62842305..62842430 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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