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    PLAC9P1 placenta associated 9 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 389033, updated on 2-Nov-2024

    Summary

    Official Symbol
    PLAC9P1provided by HGNC
    Official Full Name
    placenta associated 9 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:52678
    See related
    AllianceGenome:HGNC:52678
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis (RPKM 2.0), brain (RPKM 0.4) and 8 other tissues See more
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    Genomic context

    See PLAC9P1 in Genome Data Viewer
    Location:
    2q21.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (129922862..129934317, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (130352503..130363957, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (130680435..130691890, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2572 Neighboring gene Sharpr-MPRA regulatory region 12033 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130635324-130635880 Neighboring gene uncharacterized LOC105373616 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130635881-130636436 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130638314-130638814 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:130645385-130645622 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130666529-130667049 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130671974-130672474 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130672475-130672975 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130680057-130680872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130680873-130681686 Neighboring gene long intergenic non-protein coding RNA 1856 Neighboring gene ribosomal protein L22 pseudogene 7 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:130719837-130720403 Neighboring gene RAB6C antisense RNA 1 Neighboring gene RAB6C, member RAS oncogene family

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026740.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AI161103, BF592795

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      129922862..129934317 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_025791762.1 Reference GRCh38.p14 PATCHES

      Range
      95104..106559 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      130352503..130363957 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)