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    Lgals1 lectin, galactose binding, soluble 1 [ Mus musculus (house mouse) ]

    Gene ID: 16852, updated on 27-Nov-2024

    Summary

    Official Symbol
    Lgals1provided by MGI
    Official Full Name
    lectin, galactose binding, soluble 1provided by MGI
    Primary source
    MGI:MGI:96777
    See related
    Ensembl:ENSMUSG00000068220 AllianceGenome:MGI:96777
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    L14; Gal-1; Galbp; L-14.5; Lect14; galectin-1
    Summary
    Enables carbohydrate binding activity. Acts upstream of or within T cell costimulation; myoblast differentiation; and plasma cell differentiation. Located in extracellular space. Is expressed in several structures, including cardiovascular system; embryo mesenchyme; genitourinary system; main olfactory bulb; and olfactory system. Orthologous to human LGALS1 (galectin 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in subcutaneous fat pad adult (RPKM 1022.5), genital fat pad adult (RPKM 721.2) and 17 other tissues See more
    Orthologs
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    Genomic context

    See Lgals1 in Genome Data Viewer
    Location:
    15 E1; 15 37.7 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (78810925..78814665)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (78926725..78930465)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene SH3-domain binding protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E480 Neighboring gene pyridoxal (pyridoxine, vitamin B6) phosphatase Neighboring gene predicted gene, 30368 Neighboring gene STARR-positive B cell enhancer ABC_E10867 Neighboring gene nucleolar protein 12 Neighboring gene TRIO and F-actin binding protein Neighboring gene STARR-positive B cell enhancer ABC_E8975 Neighboring gene predicted gene 10865 Neighboring gene microRNA 6956

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 
    • Targeted (2)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables carbohydrate binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables galactose binding NAS
    Non-traceable Author Statement
    more info
    PubMed 
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables lactose binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables lactose binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables laminin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables laminin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables receptor ligand activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within T cell costimulation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cell-cell adhesion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules NAS
    Non-traceable Author Statement
    more info
    PubMed 
    NOT involved_in maintenance of protein location IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within myoblast differentiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of T-helper 17 cell lineage commitment IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of cell-substrate adhesion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of neuron projection development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within plasma cell differentiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of erythrocyte aggregation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of inflammatory response ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of viral entry into host cell IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of viral entry into host cell ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    located_in collagen-containing extracellular matrix HDA PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular region TAS
    Traceable Author Statement
    more info
     
    located_in extracellular space HDA PubMed 
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of galectin complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    galectin-1
    Names
    14 kDa lectin
    S-Lac lectin 1
    beta-galactoside binding protein
    beta-galactoside-binding lectin L-14-I
    galaptin
    lactose-binding lectin 1
    lectin galactoside-binding soluble 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008495.2NP_032521.1  galectin-1

      See identical proteins and their annotated locations for NP_032521.1

      Status: VALIDATED

      Source sequence(s)
      BE956470, X66532
      Consensus CDS
      CCDS27628.1
      UniProtKB/Swiss-Prot
      P05163, P11946, P16045, P17601, Q4FZH4, Q99M27, Q9D0X0
      Related
      ENSMUSP00000086795.6, ENSMUST00000089377.6
      Conserved Domains (1) summary
      smart00276
      Location:11135
      GLECT; Galectin

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      78810925..78814665
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)