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    Ugt2b38 UDP glucuronosyltransferase 2 family, polypeptide B38 [ Mus musculus (house mouse) ]

    Gene ID: 100559, updated on 27-Dec-2024

    Summary

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    Official Symbol
    Ugt2b38provided by MGI
    Official Full Name
    UDP glucuronosyltransferase 2 family, polypeptide B38provided by MGI
    Primary source
    MGI:MGI:2140794
    See related
    Ensembl:ENSMUSG00000061906 AllianceGenome:MGI:2140794
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9430041C03Rik
    Summary
    Predicted to enable glucuronosyltransferase activity. Predicted to be involved in steroid metabolic process and xenobiotic glucuronidation. Predicted to be located in endoplasmic reticulum and nuclear outer membrane. Is expressed in renal calyx. Orthologous to human UGT2B28 (UDP glucuronosyltransferase family 2 member B28). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in kidney adult (RPKM 16.1), liver adult (RPKM 10.6) and 1 other tissue See more
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    Genomic context

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    See Ugt2b38 in Genome Data Viewer
    Location:
    5 E1; 5 43.56 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (87557798..87572062, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (87409939..87424203, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene UDP glucuronosyltransferase 2 family, polypeptide B36 pseudogene Neighboring gene EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase pseudogene Neighboring gene STARR-seq mESC enhancer starr_13559 Neighboring gene UDP glucuronosyltransferase 2 family, polypeptide A1 Neighboring gene UDP glucuronosyltransferase 2 family, polypeptide A2 Neighboring gene sulfotransferase family 1B, member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Visel A, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681479, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables glucuronosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables glucuronosyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in steroid metabolic process ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in xenobiotic glucuronidation ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nuclear outer membrane ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    UDP glucuronosyltransferase 2 family, polypeptide B38

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133894.2 → NP_598655.1  UDP glucuronosyltransferase 2 family, polypeptide B38 precursor

      See identical proteins and their annotated locations for NP_598655.1

      Status: VALIDATED

      Source sequence(s)
      AC101835
      Consensus CDS
      CCDS19388.1
      UniProtKB/Swiss-Prot
      P17717
      UniProtKB/TrEMBL
      Q91WH2
      Related
      ENSMUSP00000072598.6, ENSMUST00000072818.6
      Conserved Domains (2) summary
      PHA03392
      Location:8 → 506
      egt; ecdysteroid UDP-glucosyltransferase; Provisional
      pfam00201
      Location:24 → 526
      UDPGT; UDP-glucoronosyl and UDP-glucosyl transferase

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      87557798..87572062 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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