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    Speer1m spermatogenesis associated glutamate (E)-rich protein 1M [ Mus musculus (house mouse) ]

    Gene ID: 545732, updated on 27-Nov-2024

    Summary

    Official Symbol
    Speer1mprovided by MGI
    Official Full Name
    spermatogenesis associated glutamate (E)-rich protein 1Mprovided by MGI
    Primary source
    MGI:MGI:3703021
    See related
    Ensembl:ENSMUSG00000067848 AllianceGenome:MGI:3703021
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4933402N22Rik
    Expression
    Restricted expression toward testis adult (RPKM 57.7) See more
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    Genomic context

    See Speer1m in Genome Data Viewer
    Location:
    5 A1; 5 3.91 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (11968010..11972771)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (11918043..11922804)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34493 Neighboring gene predicted gene 43131 Neighboring gene STARR-seq mESC enhancer starr_12435 Neighboring gene anaphase-promoting complex subunit 5 pseudogene Neighboring gene STARR-seq mESC enhancer starr_12436 Neighboring gene STARR-seq mESC enhancer starr_12437 Neighboring gene STARR-seq mESC enhancer starr_12438 Neighboring gene STARR-seq mESC enhancer starr_12439 Neighboring gene predicted gene, 54301

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Clone Names

    • MGC129480

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    spermatogenesis associated glutamate (E)-rich protein-like protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001177510.1NP_001170981.1  spermatogenesis associated glutamate (E)-rich protein-like protein

      See identical proteins and their annotated locations for NP_001170981.1

      Status: VALIDATED

      Source sequence(s)
      AC141559
      Consensus CDS
      CCDS51414.1
      UniProtKB/TrEMBL
      A3KN63, F6R3J9
      Related
      ENSMUSP00000130317.2, ENSMUST00000170301.3
      Conserved Domains (1) summary
      pfam04822
      Location:891
      Takusan; Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      11968010..11972771
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)