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    Prr16 proline rich 16 [ Mus musculus (house mouse) ]

    Gene ID: 71373, updated on 9-Dec-2024

    Summary

    Official Symbol
    Prr16provided by MGI
    Official Full Name
    proline rich 16provided by MGI
    Primary source
    MGI:MGI:1918623
    See related
    Ensembl:ENSMUSG00000073565 AllianceGenome:MGI:1918623
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    5430406M13Rik
    Summary
    Involved in positive regulation of cell size. Orthologous to human PRR16 (proline rich 16). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in liver adult (RPKM 6.1), adrenal adult (RPKM 5.8) and 18 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Prr16 in Genome Data Viewer
    Location:
    18 D1; 18 27.97 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (51250970..51437713)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (51117898..51304641)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_44582 Neighboring gene pseudouridine 5'-phosphatase Neighboring gene STARR-seq mESC enhancer starr_44584 Neighboring gene STARR-seq mESC enhancer starr_44585 Neighboring gene STARR-seq mESC enhancer starr_44586 Neighboring gene STARR-seq mESC enhancer starr_44587 Neighboring gene STARR-seq mESC enhancer starr_44588 Neighboring gene STARR-seq mESC enhancer starr_44589 Neighboring gene STARR-seq mESC enhancer starr_44590 Neighboring gene STARR-seq mESC enhancer starr_44591 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide C pseudogene Neighboring gene predicted gene, 25739 Neighboring gene STARR-seq mESC enhancer starr_44593 Neighboring gene STARR-seq mESC enhancer starr_44594 Neighboring gene predicted gene, 41722 Neighboring gene predicted gene, 25785

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in positive regulation of cell size IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of cell size IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of cell size ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of translation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of translation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of translation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    protein Largen
    Names
    proline-rich protein 16

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081224.2NP_001074693.1  protein Largen

      Status: PROVISIONAL

      Source sequence(s)
      BC132481
      Consensus CDS
      CCDS37818.1
      UniProtKB/Swiss-Prot
      A3KMN5, Q8BLB9
      Related
      ENSMUSP00000112338.3, ENSMUST00000116639.4
      Conserved Domains (1) summary
      pfam15252
      Location:53304
      DUF4589; Domain of unknown function (DUF4589)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      51250970..51437713
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)