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    Gm12253 predicted gene 12253 [ Mus musculus (house mouse) ]

    Gene ID: 624860, updated on 27-Nov-2024

    Summary

    Official Symbol
    Gm12253provided by MGI
    Official Full Name
    predicted gene 12253provided by MGI
    Primary source
    MGI:MGI:3651568
    See related
    Ensembl:ENSMUSG00000058287 AllianceGenome:MGI:3651568
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm248
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Gm12253 in Genome Data Viewer
    Location:
    11 B1.3; 11 36.19 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (58323385..58332448)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (58432559..58441622)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_29605 Neighboring gene NADH dehydrogenase (ubiquinone) Fe-S protein 3 pseudogene Neighboring gene RIKEN cDNA 1810065E05 gene Neighboring gene LY6/PLAUR domain containing 9 Neighboring gene olfactory receptor family 2 subfamily Z member 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045542.1 → NP_001039007.1  Protein RoBo-1 precursor

      See identical proteins and their annotated locations for NP_001039007.1

      Status: INFERRED

      Source sequence(s)
      AL663107
      Consensus CDS
      CCDS36164.1
      UniProtKB/TrEMBL
      Q5NC48
      Related
      ENSMUSP00000104453.2, ENSMUST00000108825.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      58323385..58332448
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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