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    LINC01747 long intergenic non-protein coding RNA 1747 [ Homo sapiens (human) ]

    Gene ID: 105372566, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01747provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1747provided by HGNC
    Primary source
    HGNC:HGNC:52536
    See related
    AllianceGenome:HGNC:52536
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01747 in Genome Data Viewer
    Location:
    20p11.21
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (22667293..22685344, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (22726590..22744642, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (22647931..22665982, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:22562671-22563242 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:22563243-22563815 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:22565240-22565995 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:22566751-22567506 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:22567507-22568261 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr20:22571115-22571710 Neighboring gene forkhead box A2 Neighboring gene lncRNA neighboring enhancer of FOXA2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:22592186-22592856 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:22643831-22644824 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr20:22665133-22666332 Neighboring gene uncharacterized LOC124904963 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12718 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12719 Neighboring gene keratin 18 pseudogene 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_146527.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL121722, AL158175, DB081848

    2. NR_146528.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA432311, AL158175

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      22667293..22685344 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      22726590..22744642 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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