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    Gm1043 predicted gene 1043 [ Mus musculus (house mouse) ]

    Gene ID: 381634, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Gm1043provided by MGI
    Official Full Name
    predicted gene 1043provided by MGI
    Primary source
    MGI:MGI:2685889
    See related
    Ensembl:ENSMUSG00000117286 AllianceGenome:MGI:2685889
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C4orf50 (chromosome 4 open reading frame 50). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in CNS E18 (RPKM 2.5), cortex adult (RPKM 2.4) and 10 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Gm1043 in Genome Data Viewer
    Location:
    5 B3; 5 19.84 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (37310473..37394287)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (37153129..37236943)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:37370903-37371090 Neighboring gene STARR-positive B cell enhancer ABC_E6324 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:37380607-37380790 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:37389242-37389505 Neighboring gene STARR-seq mESC enhancer starr_12893 Neighboring gene wolframin ER transmembrane glycoprotein Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:37436048-37436298 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:37438571-37438789 Neighboring gene janus kinase and microtubule interacting protein 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:37442129-37442330 Neighboring gene isocitrate dehydrogenase 3 (NAD+) beta pseudogene Neighboring gene STARR-seq mESC enhancer starr_12898 Neighboring gene STARR-seq mESC enhancer starr_12900 Neighboring gene collapsin response mediator protein 1 Neighboring gene predicted gene 42935 Neighboring gene EvC ciliary complex subunit 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C4orf50 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001370827.1 → NP_001357756.1  uncharacterized protein C4orf50 homolog

      Status: VALIDATED

      Source sequence(s)
      AC110238
      UniProtKB/TrEMBL
      A0A338P719
      Conserved Domains (3) summary
      TIGR02168
      Location:42 → 318
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR02169
      Location:912 → 1085
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      pfam15030
      Location:1214 → 1405
      DUF4527; Protein of unknown function (DUF4527)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      37310473..37394287
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011240811.2 → XP_011239113.1  uncharacterized protein C4orf50 homolog isoform X1

      UniProtKB/TrEMBL
      A0A338P719
      Related
      ENSMUSP00000156188.3, ENSMUST00000232332.3
      Conserved Domains (3) summary
      TIGR02168
      Location:42 → 318
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR02169
      Location:912 → 1085
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      pfam15030
      Location:1214 → 1405
      DUF4527; Protein of unknown function (DUF4527)

    2. XM_006504236.4 → XP_006504299.1  uncharacterized protein C4orf50 homolog isoform X2

      UniProtKB/TrEMBL
      A0A338P719
      Conserved Domains (2) summary
      TIGR02168
      Location:42 → 318
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam14662
      Location:954 → 1088
      KASH_CCD; Coiled-coil region of CCDC155 or KASH
    Nucleotide Protein Strain
    Heading Accession and Version

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