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    DNA-binding protein, putative (duplicated DUF1399) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816797, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA-binding protein, putative (duplicated DUF1399)
    Primary source
    TAIR:AT2G22660
    Locus tag
    AT2G22660
    See related
    Araport:AT2G22660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9I22.10; T9I22_10
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (9627342..9631283)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene BRICK1 Neighboring gene FAD-dependent oxidoreductase family protein Neighboring gene ncRNA Neighboring gene indoleacetic acid-induced protein 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Modification of AtGRDP1 gene expression affects silique and seed development in Arabidopsis thaliana. Rodríguez-Hernández AA, et al. Biochem Biophys Res Commun, 2017 Apr 29. PMID 28285133
    2. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
    3. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
    4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036319.2
    NM_001335808.1
    NM_127831.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to osmotic stress IEP
    Inferred from Expression Pattern
    more info
    		  
    acts_upstream_of_or_within response to osmotic stress IMP
    Inferred from Mutant Phenotype
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    DNA-binding protein, putative (duplicated DUF1399)
    NP_001031396.1
    • Protein of unknown function (duplicated DUF1399); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT4G37900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_179851.2
    • Protein of unknown function (duplicated DUF1399); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT4G37900.1); Has 421 Blast hits to 378 proteins in 86 species: Archae - 0; Bacteria - 30; Metazoa - 19; Fungi - 243; Plants - 113; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9627342..9631283
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036319.2 → NP_001031396.1  DNA-binding protein, putative (duplicated DUF1399) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031396.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IJL4, Q9ZQ47
      UniProtKB/TrEMBL
      A0A654EV84
      Conserved Domains (1) summary
      pfam07173
      Location:98 → 240
      DUF1399; Protein of unknown function (DUF1399)

    2. NM_001335808.1 → NP_001325252.1  DNA-binding protein, putative (duplicated DUF1399) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2L8, A0A7G2EE90

    3. NM_127831.3 → NP_179851.2  DNA-binding protein, putative (duplicated DUF1399) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179851.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZQ47
      Conserved Domains (1) summary
      pfam07173
      Location:98 → 240
      DUF1399; Protein of unknown function (DUF1399)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZQ47.1

    Gene LinkOut

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