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    RPL13AP5 ribosomal protein L13a pseudogene 5 [ Homo sapiens (human) ]

    Gene ID: 728658, updated on 10-Dec-2024

    Summary

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    Official Symbol
    RPL13AP5provided by HGNC
    Official Full Name
    ribosomal protein L13a pseudogene 5provided by HGNC
    Primary source
    HGNC:HGNC:23736
    See related
    Ensembl:ENSG00000236552 AllianceGenome:HGNC:23736
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    bA196N24.2; RPL13A_8_1086
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    Genomic context

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    See RPL13AP5 in Genome Data Viewer
    Location:
    10q24.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (96750266..96750923)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (97631500..97632157)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (98510023..98510680)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene phosphoinositide-3-kinase adaptor protein 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:98382174-98382395 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3829 Neighboring gene ribosomal protein S2 pseudogene 36 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3830 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3831 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2656 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3832 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3833 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3834 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2657 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:98460100-98460600 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3836 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3837 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2658 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2659 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3838 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3839 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3840 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:98493035-98493740 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:98494688-98495484 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3841 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3842 Neighboring gene RNA, U6 small nuclear 1274, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2660 Neighboring gene uncharacterized LOC102723665 Neighboring gene CRISPRi-validated cis-regulatory element chr10.3525 Neighboring gene H3K27ac hESC enhancers GRCh37_chr10:98591864-98592578 and GRCh37_chr10:98592579-98593294 Neighboring gene microRNA 607 Neighboring gene ligand dependent nuclear receptor corepressor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026712.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL358235
      Related
      ENST00000439189.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      96750266..96750923
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      97631500..97632157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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