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    Rreb1 ras responsive element binding protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 68750, updated on 27-Nov-2024

    Summary

    Official Symbol
    Rreb1provided by MGI
    Official Full Name
    ras responsive element binding protein 1provided by MGI
    Primary source
    MGI:MGI:2443664
    See related
    Ensembl:ENSMUSG00000039087 AllianceGenome:MGI:2443664
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    sao; 1110037N09Rik; B930013M22Rik
    Summary
    Enables DNA-binding transcription factor activity. Involved in negative regulation of transcription by RNA polymerase II and positive regulation of brown fat cell differentiation. Acts upstream of or within negative regulation of DNA-templated transcription. Predicted to be located in fibrillar center and nuclear speck. Predicted to be active in nucleus. Is expressed in alimentary system; central nervous system; and genitourinary system. Used to study RASopathy. Orthologous to human RREB1 (ras responsive element binding protein 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in adrenal adult (RPKM 5.6), colon adult (RPKM 5.2) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Rreb1 in Genome Data Viewer
    Location:
    13 A3.3; 13
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (37962362..38135981)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (37778382..37952005)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_34225 Neighboring gene predicted gene, 40918 Neighboring gene STARR-seq mESC enhancer starr_34227 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:37870871-37870980 Neighboring gene predicted gene, 31600 Neighboring gene STARR-positive B cell enhancer mm9_chr13:37884809-37885110 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:37893604-37893840 Neighboring gene predicted gene, 46411 Neighboring gene STARR-positive B cell enhancer ABC_E1461 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:37972487-37972670 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:37974410-37974611 Neighboring gene STARR-seq mESC enhancer starr_34234 Neighboring gene STARR-positive B cell enhancer ABC_E11541 Neighboring gene STARR-positive B cell enhancer ABC_E7227 Neighboring gene STARR-positive B cell enhancer ABC_E10789 Neighboring gene predicted gene, 52041 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:38086110-38086293 Neighboring gene signal sequence receptor, alpha Neighboring gene STARR-positive B cell enhancer ABC_E9396 Neighboring gene cancer antigen 1 Neighboring gene RIO kinase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (6)  1 citation
    • Spontaneous (1) 
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of brown fat cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of epithelial cell migration IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of epithelial cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of lamellipodium morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of lamellipodium morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of mammary gland epithelial cell proliferation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of mammary gland epithelial cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of substrate adhesion-dependent cell spreading IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of substrate adhesion-dependent cell spreading ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of wound healing, spreading of epidermal cells IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of wound healing, spreading of epidermal cells ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in fibrillar center IEA
    Inferred from Electronic Annotation
    more info
     
    located_in fibrillar center ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nuclear speck ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    ras-responsive element-binding protein 1
    Names
    RAS-responsive zinc finger transcription factor RREB

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039188.2NP_001034277.1  ras-responsive element-binding protein 1 isoform 1

      See identical proteins and their annotated locations for NP_001034277.1

      Status: VALIDATED

      Source sequence(s)
      AC022682, CT010477
      Consensus CDS
      CCDS36634.1
      UniProtKB/Swiss-Prot
      Q3UH06
      Related
      ENSMUSP00000105866.3, ENSMUST00000110237.9
      Conserved Domains (3) summary
      COG5048
      Location:64244
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:6888
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:111136
      zf-H2C2_2; Zinc-finger double domain
    2. NM_001177868.2NP_001171339.1  ras-responsive element-binding protein 1 isoform 1

      See identical proteins and their annotated locations for NP_001171339.1

      Status: VALIDATED

      Source sequence(s)
      AC022682, CT010477
      Consensus CDS
      CCDS36634.1
      UniProtKB/Swiss-Prot
      Q3UH06
      Related
      ENSMUSP00000121211.2, ENSMUST00000149745.8
      Conserved Domains (3) summary
      COG5048
      Location:64244
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:6888
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:111136
      zf-H2C2_2; Zinc-finger double domain
    3. NM_001177869.2NP_001171340.1  ras-responsive element-binding protein 1 isoform 2

      See identical proteins and their annotated locations for NP_001171340.1

      Status: VALIDATED

      Source sequence(s)
      AC022682, CT010477
      Consensus CDS
      CCDS49238.1
      UniProtKB/Swiss-Prot
      Q3UH06
      Conserved Domains (8) summary
      smart00355
      Location:12531273
      ZnF_C2H2; zinc finger
      COG5048
      Location:64244
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:6888
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:16021624
      zf-C2H2; Zinc finger, C2H2 type
      pfam04625
      Location:381672
      DEC-1_N; DEC-1 protein, N-terminal region
      pfam13465
      Location:15881612
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:669693
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:15751596
      zf-C2H2_6; C2H2-type zinc finger
    4. NM_001404757.1NP_001391686.1  ras-responsive element-binding protein 1 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC022682, CT010477
      UniProtKB/Swiss-Prot
      B8JJE2, B8JJE3, Q3TB97, Q3UH06, Q4ZE88, Q66JZ8
    5. NM_001404758.1NP_001391687.1  ras-responsive element-binding protein 1 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC022682, CT010477
      UniProtKB/Swiss-Prot
      B8JJE2, B8JJE3, Q3TB97, Q3UH06, Q4ZE88, Q66JZ8
    6. NM_001404759.1NP_001391688.1  ras-responsive element-binding protein 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC022682, CT010477
    7. NM_001404760.1NP_001391689.1  ras-responsive element-binding protein 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC022682, CT010477
    8. NM_026830.3NP_081106.1  ras-responsive element-binding protein 1 isoform 1

      See identical proteins and their annotated locations for NP_081106.1

      Status: VALIDATED

      Source sequence(s)
      AC022682, CT010477
      Consensus CDS
      CCDS36634.1
      UniProtKB/Swiss-Prot
      Q3UH06
      Related
      ENSMUSP00000105867.3, ENSMUST00000110238.10
      Conserved Domains (3) summary
      COG5048
      Location:64244
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:6888
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:111136
      zf-H2C2_2; Zinc-finger double domain

    RNA

    1. NR_033218.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CT010477
      Related
      ENSMUST00000124268.8
    2. NR_033615.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022682, CT010477

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      37962362..38135981
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516757.5XP_006516820.1  ras-responsive element-binding protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006516820.1

      UniProtKB/Swiss-Prot
      Q3UH06
      Conserved Domains (8) summary
      smart00355
      Location:12531273
      ZnF_C2H2; zinc finger
      COG5048
      Location:64244
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:6888
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:16021624
      zf-C2H2; Zinc finger, C2H2 type
      pfam04625
      Location:381672
      DEC-1_N; DEC-1 protein, N-terminal region
      pfam13465
      Location:15881612
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:669693
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:15751596
      zf-C2H2_6; C2H2-type zinc finger
    2. XM_030247397.2XP_030103257.1  ras-responsive element-binding protein 1 isoform X4

      Conserved Domains (8) summary
      smart00355
      Location:11711191
      ZnF_C2H2; zinc finger
      sd00017
      Location:1737
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:15201542
      zf-C2H2; Zinc finger, C2H2 type
      pfam04625
      Location:299590
      DEC-1_N; DEC-1 protein, N-terminal region
      pfam13465
      Location:15061530
      zf-H2C2_2; Zinc-finger double domain
      pfam13894
      Location:124146
      zf-C2H2_4; C2H2-type zinc finger
      pfam13909
      Location:587611
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:14931514
      zf-C2H2_6; C2H2-type zinc finger
    3. XM_006516754.5XP_006516817.1  ras-responsive element-binding protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006516817.1

      UniProtKB/Swiss-Prot
      Q3UH06
      Conserved Domains (8) summary
      smart00355
      Location:12531273
      ZnF_C2H2; zinc finger
      COG5048
      Location:64244
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:6888
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:16021624
      zf-C2H2; Zinc finger, C2H2 type
      pfam04625
      Location:381672
      DEC-1_N; DEC-1 protein, N-terminal region
      pfam13465
      Location:15881612
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:669693
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:15751596
      zf-C2H2_6; C2H2-type zinc finger
    4. XM_030247395.2XP_030103255.1  ras-responsive element-binding protein 1 isoform X4

      Conserved Domains (8) summary
      smart00355
      Location:11711191
      ZnF_C2H2; zinc finger
      sd00017
      Location:1737
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:15201542
      zf-C2H2; Zinc finger, C2H2 type
      pfam04625
      Location:299590
      DEC-1_N; DEC-1 protein, N-terminal region
      pfam13465
      Location:15061530
      zf-H2C2_2; Zinc-finger double domain
      pfam13894
      Location:124146
      zf-C2H2_4; C2H2-type zinc finger
      pfam13909
      Location:587611
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:14931514
      zf-C2H2_6; C2H2-type zinc finger
    5. XM_030247396.2XP_030103256.1  ras-responsive element-binding protein 1 isoform X4

      Conserved Domains (8) summary
      smart00355
      Location:11711191
      ZnF_C2H2; zinc finger
      sd00017
      Location:1737
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:15201542
      zf-C2H2; Zinc finger, C2H2 type
      pfam04625
      Location:299590
      DEC-1_N; DEC-1 protein, N-terminal region
      pfam13465
      Location:15061530
      zf-H2C2_2; Zinc-finger double domain
      pfam13894
      Location:124146
      zf-C2H2_4; C2H2-type zinc finger
      pfam13909
      Location:587611
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:14931514
      zf-C2H2_6; C2H2-type zinc finger
    6. XM_006516749.3XP_006516812.1  ras-responsive element-binding protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006516812.1

      UniProtKB/Swiss-Prot
      Q3UH06
      Related
      ENSMUSP00000115599.2, ENSMUST00000128570.9
      Conserved Domains (8) summary
      smart00355
      Location:12531273
      ZnF_C2H2; zinc finger
      COG5048
      Location:64244
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:6888
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:16021624
      zf-C2H2; Zinc finger, C2H2 type
      pfam04625
      Location:381672
      DEC-1_N; DEC-1 protein, N-terminal region
      pfam13465
      Location:15881612
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:669693
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:15751596
      zf-C2H2_6; C2H2-type zinc finger
    7. XM_006516758.3XP_006516821.1  ras-responsive element-binding protein 1 isoform X2

      Conserved Domains (8) summary
      smart00355
      Location:12531273
      ZnF_C2H2; zinc finger
      COG5048
      Location:64244
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:6888
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:15511571
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:15491571
      zf-C2H2; Zinc finger, C2H2 type
      pfam04625
      Location:381672
      DEC-1_N; DEC-1 protein, N-terminal region
      pfam13465
      Location:12651290
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:669693
      zf-H2C2_5; C2H2-type zinc-finger domain
    8. XM_011244341.4XP_011242643.1  ras-responsive element-binding protein 1 isoform X4

      Conserved Domains (8) summary
      smart00355
      Location:11711191
      ZnF_C2H2; zinc finger
      sd00017
      Location:1737
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:15201542
      zf-C2H2; Zinc finger, C2H2 type
      pfam04625
      Location:299590
      DEC-1_N; DEC-1 protein, N-terminal region
      pfam13465
      Location:15061530
      zf-H2C2_2; Zinc-finger double domain
      pfam13894
      Location:124146
      zf-C2H2_4; C2H2-type zinc finger
      pfam13909
      Location:587611
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:14931514
      zf-C2H2_6; C2H2-type zinc finger
    9. XM_006516756.4XP_006516819.1  ras-responsive element-binding protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006516819.1

      UniProtKB/Swiss-Prot
      Q3UH06
      Related
      ENSMUSP00000049265.8, ENSMUST00000037232.8
      Conserved Domains (8) summary
      smart00355
      Location:12531273
      ZnF_C2H2; zinc finger
      COG5048
      Location:64244
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:6888
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:16021624
      zf-C2H2; Zinc finger, C2H2 type
      pfam04625
      Location:381672
      DEC-1_N; DEC-1 protein, N-terminal region
      pfam13465
      Location:15881612
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:669693
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:15751596
      zf-C2H2_6; C2H2-type zinc finger
    10. XM_006516751.4XP_006516814.1  ras-responsive element-binding protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006516814.1

      UniProtKB/Swiss-Prot
      Q3UH06
      Conserved Domains (8) summary
      smart00355
      Location:12531273
      ZnF_C2H2; zinc finger
      COG5048
      Location:64244
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:6888
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:16021624
      zf-C2H2; Zinc finger, C2H2 type
      pfam04625
      Location:381672
      DEC-1_N; DEC-1 protein, N-terminal region
      pfam13465
      Location:15881612
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:669693
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:15751596
      zf-C2H2_6; C2H2-type zinc finger
    11. XM_006516752.3XP_006516815.1  ras-responsive element-binding protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006516815.1

      UniProtKB/Swiss-Prot
      Q3UH06
      Conserved Domains (8) summary
      smart00355
      Location:12531273
      ZnF_C2H2; zinc finger
      COG5048
      Location:64244
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:6888
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:16021624
      zf-C2H2; Zinc finger, C2H2 type
      pfam04625
      Location:381672
      DEC-1_N; DEC-1 protein, N-terminal region
      pfam13465
      Location:15881612
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:669693
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:15751596
      zf-C2H2_6; C2H2-type zinc finger
    12. XM_006516753.5XP_006516816.1  ras-responsive element-binding protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006516816.1

      UniProtKB/Swiss-Prot
      Q3UH06
      Conserved Domains (8) summary
      smart00355
      Location:12531273
      ZnF_C2H2; zinc finger
      COG5048
      Location:64244
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:6888
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:16021624
      zf-C2H2; Zinc finger, C2H2 type
      pfam04625
      Location:381672
      DEC-1_N; DEC-1 protein, N-terminal region
      pfam13465
      Location:15881612
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:669693
      zf-H2C2_5; C2H2-type zinc-finger domain
      pfam13912
      Location:15751596
      zf-C2H2_6; C2H2-type zinc finger

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001013392.3: Suppressed sequence

      Description
      NM_001013392.3: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.