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    RPL12-A ribosomal protein L12-A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822403, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPL12-A
    Official Full Name
    ribosomal protein L12-A
    Primary source
    TAIR:AT3G27830
    Locus tag
    AT3G27830
    See related
    Araport:AT3G27830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RIBOSOMAL PROTEIN L12; ribosomal protein L12-A; RPL12
    Summary
    50S ribosomal protein L12-A
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    Genomic context

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    See RPL12-A in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (10318455..10319920)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene monodehydroascorbate reductase 4 Neighboring gene tRNA-Pro Neighboring gene Gamma-thionin family protein Neighboring gene Gamma-thionin family protein Neighboring gene ribosomal protein L12-B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multicopy GTPase center protein L12 of Arabidopsis chloroplast ribosome is encoded by a clustered nuclear gene family with the expressed members closely linked to tRNA(Pro) genes. Weglöhner W, et al. J Biol Chem, 1994 Mar 11. PMID 8125949
    2. SMALL AUXIN UP RNA62/75 Are Required for the Translation of Transcripts Essential for Pollen Tube Growth. He SL, et al. Plant Physiol, 2018 Oct. PMID 30093526, Free PMC Article
    3. Analysis of the chloroplast proteome in arc mutants and identification of novel protein components associated with FtsZ2. Gargano D, et al. Plant Mol Biol, 2013 Feb. PMID 23225155
    4. pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. Pfalz J, et al. Plant Cell, 2006 Jan. PMID 16326926, Free PMC Article
    5. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001338912.1
    NM_113699.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within translation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast nucleoid HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in plasmodesma HDA PubMed 
    part_of plastid large ribosomal subunit ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    ribosomal protein L12-A
    NP_189421.1
    • ribosomal protein L12-A (RPL12-A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: cotyledon, juvenile leaf, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7/L12 (InterPro:IPR000206), Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, oligomerisation (InterPro:IPR008932), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: ribosomal protein L12-C (TAIR:AT3G27850.1); Has 8536 Blast hits to 8536 proteins in 2747 species: Archae - 0; Bacteria - 5673; Metazoa - 193; Fungi - 128; Plants - 248; Viruses - 0; Other Eukaryotes - 2294 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10318455..10319920
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113699.3 → NP_189421.1  ribosomal protein L12-A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189421.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P36210
      UniProtKB/TrEMBL
      A0A178VJ19, A0A5S9XH20
      Conserved Domains (1) summary
      cd00387
      Location:64 → 190
      Ribosomal_L7_L12; Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of ...

    2. NM_001338912.1 → NP_001326742.1  ribosomal protein L12-A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P36210
      UniProtKB/TrEMBL
      A0A178VJ19, A0A5S9XH20
      Conserved Domains (1) summary
      cd00387
      Location:64 → 190
      Ribosomal_L7_L12; Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P36210.1

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