U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Trim9 tripartite motif-containing 9 [ Mus musculus (house mouse) ]

    Gene ID: 94090, updated on 3-Dec-2024

    Summary

    Official Symbol
    Trim9provided by MGI
    Official Full Name
    tripartite motif-containing 9provided by MGI
    Primary source
    MGI:MGI:2137354
    See related
    Ensembl:ENSMUSG00000021071 AllianceGenome:MGI:2137354
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to enable several functions, including SNARE binding activity; protein homodimerization activity; and ubiquitin protein ligase activity. Predicted to be involved in negative regulation of SNARE complex assembly; negative regulation of calcium ion-dependent exocytosis; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within synaptic vesicle exocytosis. Located in cytoplasm and dendrite. Is expressed in several structures, including alimentary system; limb; nervous system; sensory organ; and urinary system. Orthologous to human TRIM9 (tripartite motif containing 9). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in frontal lobe adult (RPKM 15.7), cortex adult (RPKM 12.9) and 5 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Trim9 in Genome Data Viewer
    Location:
    12 C2; 12 29.07 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (70291307..70394404, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (70244533..70347869, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_32387 Neighboring gene liver glycogen phosphorylase Neighboring gene RIKEN cDNA F730035M05 gene Neighboring gene STARR-seq mESC enhancer starr_32388 Neighboring gene predicted gene, 38467 Neighboring gene STARR-seq mESC enhancer starr_32389 Neighboring gene predicted gene, 40435 Neighboring gene predicted gene, 51972

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 
    • Targeted (3)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • mKIAA0282, C030048G07Rik

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables SNARE binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein domain specific binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables ubiquitin protein ligase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables ubiquitin protein ligase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in dendrite IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in dendrite ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in presynaptic cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in synaptic vesicle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in synaptic vesicle ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    E3 ubiquitin-protein ligase TRIM9
    Names
    RING-type E3 ubiquitin transferase TRIM9
    tripartite motif-containing protein 9
    NP_001103672.1
    NP_001103673.1
    NP_001273315.1
    NP_001273316.1
    NP_001273317.1
    NP_001392290.1
    NP_001392291.1
    NP_001392292.1
    NP_001392293.1
    NP_001392294.1
    NP_001392295.1
    NP_001392296.1
    NP_001392297.1
    NP_001392298.1
    NP_001392299.1
    NP_001392300.1
    NP_001392301.1
    NP_001392302.1
    NP_001392303.1
    NP_001392304.1
    NP_001392305.1
    NP_001392306.1
    NP_001392307.1
    NP_001392308.1
    NP_001392309.1
    NP_001392310.1
    NP_001392311.1
    NP_001392312.1
    NP_001392313.1
    NP_001392314.1
    NP_001392315.1
    NP_001392316.1
    NP_444397.2
    XP_006516465.1
    XP_017170752.1
    XP_017170754.1
    XP_030102867.1
    XP_036013585.1
    XP_036013586.1
    XP_036013588.1
    XP_036013589.1
    XP_036013591.1
    XP_036013592.1
    XP_036013596.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001110202.2NP_001103672.1  E3 ubiquitin-protein ligase TRIM9 isoform 2

      See identical proteins and their annotated locations for NP_001103672.1

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      Consensus CDS
      CCDS49077.1
      UniProtKB/TrEMBL
      A0A1Y7VJX8
      Related
      ENSMUSP00000106149.3, ENSMUST00000110520.10
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:557704
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    2. NM_001110203.2NP_001103673.1  E3 ubiquitin-protein ligase TRIM9 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      Consensus CDS
      CCDS49079.1
      UniProtKB/TrEMBL
      E9Q524
      Related
      ENSMUSP00000127081.2, ENSMUST00000167755.3
      Conserved Domains (4) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cl00034
      Location:223271
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:552
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    3. NM_001286386.2NP_001273315.1  E3 ubiquitin-protein ligase TRIM9 isoform 4

      See identical proteins and their annotated locations for NP_001273315.1

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      Consensus CDS
      CCDS88348.1
      UniProtKB/Swiss-Prot
      Q8C7M3
      Related
      ENSMUSP00000152692.2, ENSMUST00000221370.2
      Conserved Domains (4) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cl00034
      Location:223271
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:552
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    4. NM_001286387.2NP_001273316.1  E3 ubiquitin-protein ligase TRIM9 isoform 5

      See identical proteins and their annotated locations for NP_001273316.1

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A1Y7VJX8, Q3TR28
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:630777
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    5. NM_001286388.2NP_001273317.1  E3 ubiquitin-protein ligase TRIM9 isoform 6

      See identical proteins and their annotated locations for NP_001273317.1

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A1Y7VJX8
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:631796
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    6. NM_001405361.1NP_001392290.1  E3 ubiquitin-protein ligase TRIM9 isoform 7

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/Swiss-Prot
      Q6ZQE5, Q80WT6, Q8C7M3, Q8C7Z4, Q8CC32, Q8CEG2, Q99PQ3
      UniProtKB/TrEMBL
      A0A1Y7VJX8
      Related
      ENSMUSP00000152147.2, ENSMUST00000222316.2
    7. NM_001405362.1NP_001392291.1  E3 ubiquitin-protein ligase TRIM9 isoform 8

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A1Y7VJX8
    8. NM_001405363.1NP_001392292.1  E3 ubiquitin-protein ligase TRIM9 isoform 9

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A1Y7VJX8
    9. NM_001405364.1NP_001392293.1  E3 ubiquitin-protein ligase TRIM9 isoform 10

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A1Y7VJX8
    10. NM_001405365.1NP_001392294.1  E3 ubiquitin-protein ligase TRIM9 isoform 11

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A1Y7VJX8
    11. NM_001405366.1NP_001392295.1  E3 ubiquitin-protein ligase TRIM9 isoform 12

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A1Y7VJX8
    12. NM_001405367.1NP_001392296.1  E3 ubiquitin-protein ligase TRIM9 isoform 13

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A1Y7VJX8
    13. NM_001405368.1NP_001392297.1  E3 ubiquitin-protein ligase TRIM9 isoform 14

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A1Y7VJX8
    14. NM_001405369.1NP_001392298.1  E3 ubiquitin-protein ligase TRIM9 isoform 15

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A1Y7VJX8
    15. NM_001405370.1NP_001392299.1  E3 ubiquitin-protein ligase TRIM9 isoform 16

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A1Y7VJX8
    16. NM_001405371.1NP_001392300.1  E3 ubiquitin-protein ligase TRIM9 isoform 17

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A1Y7VJX8, A0A1Y7VP88
      Related
      ENSMUSP00000152887.2, ENSMUST00000223160.2
    17. NM_001405372.1NP_001392301.1  E3 ubiquitin-protein ligase TRIM9 isoform 18

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A1Y7VJX8
    18. NM_001405373.1NP_001392302.1  E3 ubiquitin-protein ligase TRIM9 isoform 19

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A1Y7VJX8
    19. NM_001405374.1NP_001392303.1  E3 ubiquitin-protein ligase TRIM9 isoform 20

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A1Y7VJX8
    20. NM_001405375.1NP_001392304.1  E3 ubiquitin-protein ligase TRIM9 isoform 21

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
    21. NM_001405376.1NP_001392305.1  E3 ubiquitin-protein ligase TRIM9 isoform 22

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      Related
      ENSMUSP00000152496.2, ENSMUST00000221041.2
    22. NM_001405377.1NP_001392306.1  E3 ubiquitin-protein ligase TRIM9 isoform 23

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
    23. NM_001405378.1NP_001392307.1  E3 ubiquitin-protein ligase TRIM9 isoform 24

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
    24. NM_001405379.1NP_001392308.1  E3 ubiquitin-protein ligase TRIM9 isoform 25

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A6I8MWZ7
    25. NM_001405380.1NP_001392309.1  E3 ubiquitin-protein ligase TRIM9 isoform 25

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      UniProtKB/TrEMBL
      A0A6I8MWZ7
      Related
      ENSMUSP00000159335.2, ENSMUST00000222603.3
    26. NM_001405381.1NP_001392310.1  E3 ubiquitin-protein ligase TRIM9 isoform 27

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
    27. NM_001405382.1NP_001392311.1  E3 ubiquitin-protein ligase TRIM9 isoform 28

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
    28. NM_001405383.1NP_001392312.1  E3 ubiquitin-protein ligase TRIM9 isoform 29

      Status: VALIDATED

      Source sequence(s)
      AC147241
    29. NM_001405384.1NP_001392313.1  E3 ubiquitin-protein ligase TRIM9 isoform 30

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
    30. NM_001405385.1NP_001392314.1  E3 ubiquitin-protein ligase TRIM9 isoform 31

      Status: VALIDATED

      Source sequence(s)
      AC147241
    31. NM_001405386.1NP_001392315.1  E3 ubiquitin-protein ligase TRIM9 isoform 32

      Status: VALIDATED

      Source sequence(s)
      AC147241
    32. NM_001405387.1NP_001392316.1  E3 ubiquitin-protein ligase TRIM9 isoform 33

      Status: VALIDATED

      Source sequence(s)
      AC147241
    33. NM_053167.4NP_444397.2  E3 ubiquitin-protein ligase TRIM9 isoform 1

      See identical proteins and their annotated locations for NP_444397.2

      Status: VALIDATED

      Source sequence(s)
      AC124733, AC147241
      Consensus CDS
      CCDS49078.1
      UniProtKB/TrEMBL
      A0A1Y7VJX8, E9QLH4
      Related
      ENSMUSP00000106151.3, ENSMUST00000110522.10
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:631778
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      70291307..70394404 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036157695.1XP_036013588.1  E3 ubiquitin-protein ligase TRIM9 isoform X14

      UniProtKB/TrEMBL
      A0A1Y7VJX8
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:529690
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    2. XM_030247007.2XP_030102867.1  E3 ubiquitin-protein ligase TRIM9 isoform X6

      UniProtKB/TrEMBL
      A0A1Y7VJX8
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:620767
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    3. XM_006516402.5XP_006516465.1  E3 ubiquitin-protein ligase TRIM9 isoform X8

      UniProtKB/TrEMBL
      A0A1Y7VJX8
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:567732
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    4. XM_036157693.1XP_036013586.1  E3 ubiquitin-protein ligase TRIM9 isoform X9

      UniProtKB/TrEMBL
      A0A1Y7VJX8
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:560725
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    5. XM_017315265.3XP_017170754.1  E3 ubiquitin-protein ligase TRIM9 isoform X7

      UniProtKB/TrEMBL
      A0A1Y7VJX8
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:568733
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    6. XM_017315263.3XP_017170752.1  E3 ubiquitin-protein ligase TRIM9 isoform X3

      UniProtKB/TrEMBL
      A0A1Y7VJX8
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:623788
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    7. XM_036157692.1XP_036013585.1  E3 ubiquitin-protein ligase TRIM9 isoform X2

      UniProtKB/TrEMBL
      A0A1Y7VJX8
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:631786
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    8. XM_036157696.1XP_036013589.1  E3 ubiquitin-protein ligase TRIM9 isoform X17

      Conserved Domains (3) summary
      smart00502
      Location:27150
      BBC; B-Box C-terminal domain
      cd00063
      Location:204283
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:382547
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    9. XM_036157699.1XP_036013592.1  E3 ubiquitin-protein ligase TRIM9 isoform X20

      Conserved Domains (3) summary
      smart00502
      Location:199
      BBC; B-Box C-terminal domain
      cd00063
      Location:153232
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:331496
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    10. XM_036157703.1XP_036013596.1  E3 ubiquitin-protein ligase TRIM9 isoform X23

      Conserved Domains (3) summary
      smart00502
      Location:199
      BBC; B-Box C-terminal domain
      cd00063
      Location:153232
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:229396
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    11. XM_036157698.1XP_036013591.1  E3 ubiquitin-protein ligase TRIM9 isoform X18

      UniProtKB/TrEMBL
      A0A6I8MWZ7
      Conserved Domains (5) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00162
      Location:1049
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:223271
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:552
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    RNA

    1. XR_381560.5 RNA Sequence