Tigd2 tigger transposable element derived 2 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Tigd2provided by MGI
Official Full Name: tigger transposable element derived 2provided by MGI
Primary source: MGI:MGI:1915390
See related: Ensembl:ENSMUSG00000049232 AllianceGenome:MGI:1915390
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: 3632410O17Rik
Summary: Predicted to enable DNA binding activity. Predicted to be active in nucleus. Orthologous to human TIGD2 (tigger transposable element derived 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Ubiquitous expression in adrenal adult (RPKM 3.7), bladder adult (RPKM 2.3) and 28 other tissues See more
Orthologs: human all
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Genomic context

Location:: 6 B3; 6 28.29 cM

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	6	NC_000072.7 (59185855..59189018)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	6	NC_000072.6 (59208870..59212033)

Chromosome 6 - NC_000072.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: tigger transposable element-derived protein 2

Names: tigger transposable element derived 2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001081145.1 → NP_001074614.1 tigger transposable element-derived protein 2

See identical proteins and their annotated locations for NP_001074614.1

Status: PROVISIONAL

Source sequence(s)

AC124704

Consensus CDS

CCDS39500.1

UniProtKB/Swiss-Prot

Q0VBL1, Q505P7, Q6NV77

Related

ENSMUSP00000057223.4, ENSMUST00000062626.4

Conserved Domains (3) summary

pfam03184
Location:207 → 385

DDE_1; DDE superfamily endonuclease

pfam03221
Location:76 → 135

HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain

cl21459
Location:4 → 52

HTH; Helix-turn-helix domains