U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tacr2 tachykinin receptor 2 [ Mus musculus (house mouse) ]

    Gene ID: 21337, updated on 27-Nov-2024

    Summary

    Official Symbol
    Tacr2provided by MGI
    Official Full Name
    tachykinin receptor 2provided by MGI
    Primary source
    MGI:MGI:98477
    See related
    Ensembl:ENSMUSG00000020081 AllianceGenome:MGI:98477
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Skr; Nk2r; Tac2r
    Summary
    Predicted to enable substance K receptor activity. Involved in regulation of uterine smooth muscle contraction. Predicted to be located in sperm flagellum and sperm head. Predicted to be active in plasma membrane and sperm midpiece. Is expressed in adrenal gland and renal vasculature. Human ortholog(s) of this gene implicated in asthma. Orthologous to human TACR2 (tachykinin receptor 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in adrenal adult (RPKM 85.1), colon adult (RPKM 9.6) and 1 other tissue See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Tacr2 in Genome Data Viewer
    Location:
    10 B4; 10 32.37 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (62088217..62101769)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (62252438..62265990)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_26874 Neighboring gene neurogenin 3 Neighboring gene STARR-positive B cell enhancer mm9_chr10:61645889-61646190 Neighboring gene tetraspanin 15 Neighboring gene microRNA 7662 Neighboring gene STARR-seq mESC enhancer starr_26875 Neighboring gene hexokinase 1 Neighboring gene STARR-seq mESC enhancer starr_26881 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:61802071-61802272 Neighboring gene STARR-positive B cell enhancer ABC_E9791 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:61803279-61803470 Neighboring gene hexokinase 1, opposite strand Neighboring gene hexokinase domain containing 1 Neighboring gene predicted gene, 30322

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (2) 

    Pathways from PubChem

    General gene information

    Markers

    Clone Names

    • MGC129144, MGC129145

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables substance K receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables substance K receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables substance K receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in intestine smooth muscle contraction IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in intestine smooth muscle contraction ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of luteinizing hormone secretion IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of luteinizing hormone secretion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in operant conditioning IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in operant conditioning ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of acetylcholine secretion, neurotransmission IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of acetylcholine secretion, neurotransmission ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of flagellated sperm motility IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of flagellated sperm motility IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of flagellated sperm motility ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of monoatomic ion transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of uterine smooth muscle contraction IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of uterine smooth muscle contraction ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of vascular permeability IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of vascular permeability ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in prolactin secretion IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in prolactin secretion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of uterine smooth muscle contraction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in response to electrical stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in tachykinin receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in sperm flagellum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in sperm head IEA
    Inferred from Electronic Annotation
    more info
     
    located_in sperm head ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in sperm midpiece IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in sperm midpiece IEA
    Inferred from Electronic Annotation
    more info
     
    located_in sperm midpiece ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    substance-K receptor
    Names
    7 transmembrane receptor
    NK-2 receptor
    NK-2R
    neurokinin A receptor
    tachykinin NK-2 receptor

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009314.4NP_033340.3  substance-K receptor

      See identical proteins and their annotated locations for NP_033340.3

      Status: VALIDATED

      Source sequence(s)
      AC127417, AK033443, BC106960
      Consensus CDS
      CCDS35919.1
      UniProtKB/Swiss-Prot
      P30549
      UniProtKB/TrEMBL
      Q3KP20, Q8BZV9
      Related
      ENSMUSP00000020278.6, ENSMUST00000020278.6
      Conserved Domains (2) summary
      pfam00001
      Location:50307
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:42168
      7tm_4; Olfactory receptor

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      62088217..62101769
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)