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    Mrpl13 mitochondrial ribosomal protein L13 [ Mus musculus (house mouse) ]

    Gene ID: 68537, updated on 27-Nov-2024

    Summary

    Official Symbol
    Mrpl13provided by MGI
    Official Full Name
    mitochondrial ribosomal protein L13provided by MGI
    Primary source
    MGI:MGI:2137218
    See related
    Ensembl:ENSMUSG00000022370 AllianceGenome:MGI:2137218
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110002D09Rik
    Summary
    Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in negative regulation of translation. Predicted to act upstream of or within translation. Located in mitochondrial ribosome. Is expressed in several structures, including early conceptus; gonad; palatal shelf; submandibular gland primordium; and telencephalon ventricular layer. Orthologous to human MRPL13 (mitochondrial ribosomal protein L13). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in CNS E11.5 (RPKM 43.7), liver E14 (RPKM 37.8) and 23 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Mrpl13 in Genome Data Viewer
    Location:
    15 D1; 15 22.02 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (55397491..55420708, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (55534095..55557312, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene collagen, type XIV, alpha 1 Neighboring gene predicted gene, 52209 Neighboring gene STARR-seq mESC enhancer starr_38711 Neighboring gene STARR-seq mESC enhancer starr_38712 Neighboring gene predicted gene, 18787 Neighboring gene Mdm2, transformed 3T3 cell double minute p53 binding protein Neighboring gene STARR-seq mESC enhancer starr_38714 Neighboring gene STARR-seq mESC enhancer starr_38715 Neighboring gene syntrophin, basic 1 Neighboring gene STARR-seq mESC enhancer starr_38716 Neighboring gene STARR-seq mESC enhancer starr_38717 Neighboring gene STARR-positive B cell enhancer ABC_E5477 Neighboring gene STARR-seq mESC enhancer starr_38718

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in mitochondrial translation NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in negative regulation of translation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within translation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in mitochondrial inner membrane NAS
    Non-traceable Author Statement
    more info
    PubMed 
    part_of mitochondrial large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of mitochondrial large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    part_of mitochondrial large ribosomal subunit ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    part_of mitochondrial large ribosomal subunit NAS
    Non-traceable Author Statement
    more info
    PubMed 
    located_in mitochondrial ribosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in mitochondrial ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrial ribosome ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    large ribosomal subunit protein uL13m
    Names
    39S ribosomal protein L13, mitochondrial
    L13mt
    MRP-L13
    NP_081035.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026759.3NP_081035.1  large ribosomal subunit protein uL13m

      See identical proteins and their annotated locations for NP_081035.1

      Status: PROVISIONAL

      Source sequence(s)
      AK003283
      Consensus CDS
      CCDS27477.1
      UniProtKB/Swiss-Prot
      Q9D1P0
      UniProtKB/TrEMBL
      Q7TMH5
      Related
      ENSMUSP00000130722.2, ENSMUST00000172387.8
      Conserved Domains (1) summary
      pfam00572
      Location:17140
      Ribosomal_L13; Ribosomal protein L13

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      55397491..55420708 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)