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    Fam217b family with sequence similarity 217, member B [ Mus musculus (house mouse) ]

    Gene ID: 71532, updated on 27-Nov-2024

    Summary

    Official Symbol
    Fam217bprovided by MGI
    Official Full Name
    family with sequence similarity 217, member Bprovided by MGI
    Primary source
    MGI:MGI:1918782
    See related
    Ensembl:ENSMUSG00000070476 AllianceGenome:MGI:1918782
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9030418K01Rik
    Summary
    Predicted to be located in cytosol and nucleoplasm. Is expressed in several structures, including brain; cardiovascular system; genitourinary system; gut; and hemolymphoid system gland. Orthologous to human FAM217B (family with sequence similarity 217 member B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in cortex adult (RPKM 6.0), frontal lobe adult (RPKM 4.7) and 19 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Fam217b in Genome Data Viewer
    Location:
    2 H4; 2 99.92 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (178055497..178066221)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (178413704..178424428)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene phosphatase and actin regulator 3 Neighboring gene synaptonemal complex protein 2 Neighboring gene GC-rich promoter binding protein 1 pseudogene Neighboring gene protein phosphatase 1, regulatory subunit 3D Neighboring gene predicted gene, 35532 Neighboring gene cadherin-like 26

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081289.2NP_001074758.1  protein FAM217B

      See identical proteins and their annotated locations for NP_001074758.1

      Status: VALIDATED

      Source sequence(s)
      AL772217
      Consensus CDS
      CCDS38372.1
      UniProtKB/TrEMBL
      A2AJW5
      Related
      ENSMUSP00000091805.5, ENSMUST00000094251.11
      Conserved Domains (1) summary
      pfam15344
      Location:103329
      FAM217; FAM217 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      178055497..178066221
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011239961.2XP_011238263.1  protein FAM217B isoform X1

      See identical proteins and their annotated locations for XP_011238263.1

      UniProtKB/TrEMBL
      A2AJW5
      Conserved Domains (1) summary
      pfam15344
      Location:103329
      FAM217; FAM217 family