These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

1. NM_001001450.4 → NP_001001450.1  synovial sarcoma, X member B, breakpoint 2 isoform 1

   See identical proteins and their annotated locations for NP_001001450.1

   Status: VALIDATED

   Description

   Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).

   Source sequence(s)

   AY244793, BC048441

   Consensus CDS

   CCDS29998.1

   UniProtKB/TrEMBL

   Q8C5Z3

   Conserved Domains (3) summary

   cd07765
   Location:61 → 98

   KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

   smart00349
   Location:60 → 115

   KRAB; krueppel associated box

   pfam09514
   Location:130 → 149

   SSXRD; SSXRD motif

2. NM_001134226.1 → NP_001127698.1  synovial sarcoma, X member B, breakpoint 2 isoform 2

   See identical proteins and their annotated locations for NP_001127698.1

   Status: VALIDATED

   Description

   Transcript Variant: This variant (2) differs in the 5' UTR and lacks a portion of the 5' coding region, compared to variant 1. This results in translation initiation at a downstream start codon and an isoform (2) with a shorter N-terminal than isoform 1.

   Source sequence(s)

   BC048441

   Consensus CDS

   CCDS52991.1

   UniProtKB/TrEMBL

   Q80ZT4

   Related

   ENSMUSP00000100065.3, ENSMUST00000103000.9

   Conserved Domains (2) summary

   cd07765
   Location:24 → 61

   KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

   smart00349
   Location:23 → 78

   KRAB; krueppel associated box

The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference GRCm39 C57BL/6J

Genomic

1. NC_000086.8 Reference GRCm39 C57BL/6J

   Range

   8320582..8327965 complement

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)