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    Them6 thioesterase superfamily member 6 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300015, updated on 9-Dec-2024

    Summary

    Official Symbol
    Them6provided by RGD
    Official Full Name
    thioesterase superfamily member 6provided by RGD
    Primary source
    RGD:1359378
    See related
    EnsemblRapid:ENSRNOG00000005929 AllianceGenome:RGD:1359378
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1359378
    Summary
    Predicted to be located in extracellular region. Orthologous to human THEM6 (thioesterase superfamily member 6). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 97.9), Kidney (RPKM 81.1) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Them6 in Genome Data Viewer
    Location:
    7q34
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (108495554..108498731)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (106606570..106609747)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (115956276..115959453)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479925 Neighboring gene activity-regulated cytoskeleton-associated protein Neighboring gene Jrk helix-turn-helix protein Neighboring gene prostate stem cell antigen Neighboring gene secreted Ly6/Plaur domain containing 1 Neighboring gene Ly6/Plaur domain containing 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    protein THEM6
    Names
    UPF0670 protein C8orf55 homolog
    UPF0670 protein THEM6 homolog
    mesenchymal stem cell protein DSCD75

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007658.1NP_001007659.1  protein THEM6 precursor

      See identical proteins and their annotated locations for NP_001007659.1

      Status: PROVISIONAL

      Source sequence(s)
      BC083742
      UniProtKB/Swiss-Prot
      Q5XIE1
      UniProtKB/TrEMBL
      A6HRX6
      Related
      ENSRNOP00000007773.5, ENSRNOT00000007773.8
      Conserved Domains (1) summary
      pfam13279
      Location:54185
      4HBT_2; Thioesterase-like superfamily

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      108495554..108498731
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)