Ly6g6f lymphocyte antigen 6 family member G6F [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Ly6g6fprovided by RGD
Official Full Name: lymphocyte antigen 6 family member G6Fprovided by RGD
Primary source: RGD:1303333
See related: EnsemblRapid:ENSRNOG00000027225 AllianceGenome:RGD:1303333
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: G6f
Summary: Predicted to be located in plasma membrane. Orthologous to human LY6G6F (lymphocyte antigen 6 family member G6F). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Spleen (RPKM 28.9) and Lung (RPKM 2.8) See more
Orthologs: human mouse all
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Genomic context

Location:: 20p12

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	20	NC_086038.1 (3742116..3746984)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	20	NC_051355.1 (3737459..3742327)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	20	NC_005119.4 (5071041..5076627, complement)

Chromosome 20 - NC_086038.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: lymphocyte antigen 6 complex locus protein G6f

Names: lymphocyte antigen 6 complex, locus G6F

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001003691.1 → NP_001003691.1 lymphocyte antigen 6 complex locus protein G6f precursor

See identical proteins and their annotated locations for NP_001003691.1

Status: VALIDATED

Source sequence(s)

BX883045

UniProtKB/Swiss-Prot

Q6MG56

UniProtKB/TrEMBL

A0A096MJA3

Related

ENSRNOP00000098100.1, ENSRNOT00000120418.2

Conserved Domains (2) summary

smart00410
Location:23 → 118

IG_like; Immunoglobulin like

cl11960
Location:27 → 128

Ig; Immunoglobulin domain