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    Vom2r72 vomeronasal 2 receptor, 72 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 689072, updated on 9-Dec-2024

    Summary

    Official Symbol
    Vom2r72provided by RGD
    Official Full Name
    vomeronasal 2 receptor, 72provided by RGD
    Primary source
    RGD:1597414
    See related
    EnsemblRapid:ENSRNOG00000090665 AllianceGenome:RGD:1597414
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Vom2r72 in Genome Data Viewer
    Location:
    14p22
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (1030037..1039313, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (887435..894893, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (765993..822360)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor 116 like, pseudogene 6 Neighboring gene vomeronasal 2 receptor, pseudogene 131 Neighboring gene vomeronasal 2 receptor, pseudogene 133 Neighboring gene transmembrane emp24 protein transport domain containing 11 Neighboring gene ring finger protein 212

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001099517.2NP_001092987.2  vomeronasal 2 receptor, 72

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      F1LZR6
      Related
      ENSRNOP00000112458.1, ENSRNOT00000137654.1
      Conserved Domains (3) summary
      cd15283
      Location:583834
      7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
      cd06365
      Location:45501
      PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
      pfam07562
      Location:509563
      NCD3G; Nine Cysteines Domain of family 3 GPCR

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      1030037..1039313 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063273637.1XP_063129707.1  vomeronasal 2 receptor, 72 isoform X3

      UniProtKB/TrEMBL
      F1LZR6
    2. XM_063273635.1XP_063129705.1  vomeronasal 2 receptor, 72 isoform X1

      UniProtKB/TrEMBL
      F1LZR6
    3. XM_063273636.1XP_063129706.1  vomeronasal 2 receptor, 72 isoform X2

      UniProtKB/TrEMBL
      F1LZR6
    4. XM_063273638.1XP_063129708.1  vomeronasal 2 receptor, 72 isoform X4

      UniProtKB/TrEMBL
      F1LZR6