Sec31b SEC31 homolog B, COPII coat complex component [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Sec31bprovided by RGD
Official Full Name: SEC31 homolog B, COPII coat complex componentprovided by RGD
Primary source: RGD:1598329
See related: EnsemblRapid:ENSRNOG00000025781 AllianceGenome:RGD:1598329
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable structural molecule activity. Predicted to be involved in COPII-coated vesicle cargo loading and endoplasmic reticulum organization. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Orthologous to human SEC31B (SEC31 homolog B, COPII coat complex component). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Muscle (RPKM 73.7), Testes (RPKM 44.1) and 5 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 1q54

Exon count:: 35

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (253324081..253353779, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (243376283..243404557, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (264266279..264294687, complement)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH137611 (e-PCR)
- UniSTS:219698

MARC_21710-21711:1036508963:1 (e-PCR)
- UniSTS:268615

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables structural molecule activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in COPII-coated vesicle cargo loading	IBA Inferred from Biological aspect of Ancestor more info
involved_in endoplasmic reticulum organization	IBA Inferred from Biological aspect of Ancestor more info
involved_in protein transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of COPII vesicle coat	IBA Inferred from Biological aspect of Ancestor more info
is_active_in endoplasmic reticulum exit site	IBA Inferred from Biological aspect of Ancestor more info
part_of vesicle coat	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: protein transport protein Sec31B

Names: SEC31 homolog B, COPII coating complex component

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001135713.1 → NP_001129185.1 protein transport protein Sec31B

Status: PROVISIONAL

Source sequence(s)

JAXUCZ010000001

UniProtKB/TrEMBL

D4ADQ9

Conserved Domains (4) summary

PHA03247
Location:798 → 1076

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:13 → 65

7WD40; WD40 repeat [structural motif]

cl14807
Location:560 → 652

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:87 → 334

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086019.1 Reference GRCr8

Range

253324081..253353779 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063264803.1 → XP_063120873.1 protein transport protein Sec31B isoform X9
XM_063264782.1 → XP_063120852.1 protein transport protein Sec31B isoform X2
XM_039080343.2 → XP_038936271.1 protein transport protein Sec31B isoform X10

Conserved Domains (4) summary

PHA03247
Location:819 → 1072

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:34 → 86

7WD40; WD40 repeat [structural motif]

cl14807
Location:581 → 673

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:108 → 355

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_039080338.2 → XP_038936266.1 protein transport protein Sec31B isoform X7

Conserved Domains (4) summary

PHA03247
Location:819 → 1097

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:34 → 86

7WD40; WD40 repeat [structural motif]

cl14807
Location:581 → 673

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:108 → 355

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_017589280.3 → XP_017444769.1 protein transport protein Sec31B isoform X4

UniProtKB/TrEMBL

D4ADQ9

Related

ENSRNOP00000101165.1, ENSRNOT00000141870.1

Conserved Domains (4) summary

PHA03247
Location:798 → 1076

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:13 → 65

7WD40; WD40 repeat [structural motif]

cl14807
Location:560 → 652

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:87 → 334

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_017589279.3 → XP_017444768.1 protein transport protein Sec31B isoform X4

UniProtKB/TrEMBL

D4ADQ9

Conserved Domains (4) summary

PHA03247
Location:798 → 1076

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:13 → 65

7WD40; WD40 repeat [structural motif]

cl14807
Location:560 → 652

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:87 → 334

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_039080330.2 → XP_038936258.1 protein transport protein Sec31B isoform X4

UniProtKB/TrEMBL

D4ADQ9

Conserved Domains (4) summary

PHA03247
Location:798 → 1076

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:13 → 65

7WD40; WD40 repeat [structural motif]

cl14807
Location:560 → 652

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:87 → 334

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_039080331.2 → XP_038936259.1 protein transport protein Sec31B isoform X5

Conserved Domains (4) summary

PHA03247
Location:786 → 1064

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:34 → 86

7WD40; WD40 repeat [structural motif]

cl14807
Location:468 → 640

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:108 → 355

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_039080332.2 → XP_038936260.1 protein transport protein Sec31B isoform X6

Related

ENSRNOP00000038038.7, ENSRNOT00000035758.7

Conserved Domains (4) summary

PHA03247
Location:819 → 1072

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:34 → 86

7WD40; WD40 repeat [structural motif]

cl14807
Location:581 → 673

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:108 → 355

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_039080320.2 → XP_038936248.1 protein transport protein Sec31B isoform X3

Conserved Domains (4) summary

PHA03247
Location:804 → 1082

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:34 → 86

7WD40; WD40 repeat [structural motif]

cl14807
Location:566 → 658

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:108 → 355

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_039080316.2 → XP_038936244.1 protein transport protein Sec31B isoform X1

Conserved Domains (4) summary

PHA03247
Location:819 → 1097

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:34 → 86

7WD40; WD40 repeat [structural motif]

cl14807
Location:581 → 673

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:108 → 355

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_017589278.3 → XP_017444767.1 protein transport protein Sec31B isoform X4

UniProtKB/TrEMBL

D4ADQ9

Conserved Domains (4) summary

PHA03247
Location:798 → 1076

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:13 → 65

7WD40; WD40 repeat [structural motif]

cl14807
Location:560 → 652

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:87 → 334

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_017589284.3 → XP_017444773.2 protein transport protein Sec31B isoform X8

Related

ENSRNOP00000101532.1, ENSRNOT00000154301.1

Conserved Domains (4) summary

PHA03247
Location:768 → 1046

PHA03247; large tegument protein UL36; Provisional

sd00039
Location:94 → 131

7WD40; WD40 repeat [structural motif]

cl14807
Location:530 → 622

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:57 → 304

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_039080350.2 → XP_038936278.1 protein transport protein Sec31B isoform X13

Conserved Domains (3) summary

sd00039
Location:34 → 86

7WD40; WD40 repeat [structural motif]

cl14807
Location:581 → 673

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:108 → 355

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_039080349.2 → XP_038936277.1 protein transport protein Sec31B isoform X12

Conserved Domains (3) summary

sd00039
Location:34 → 86

7WD40; WD40 repeat [structural motif]

cl14807
Location:581 → 673

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:108 → 355

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_063264823.1 → XP_063120893.1 protein transport protein Sec31B isoform X14
XM_039080345.2 → XP_038936273.1 protein transport protein Sec31B isoform X11

Conserved Domains (3) summary

sd00039
Location:34 → 86

7WD40; WD40 repeat [structural motif]

cl14807
Location:581 → 673

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:108 → 355

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_039080353.2 → XP_038936281.1 protein transport protein Sec31B isoform X15

Conserved Domains (3) summary

sd00039
Location:34 → 86

7WD40; WD40 repeat [structural motif]

cl14807
Location:581 → 673

ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

cl29593
Location:108 → 355

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...