Rnf225 ring finger protein 225 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Rnf225provided by RGD
Official Full Name: ring finger protein 225provided by RGD
Primary source: RGD:1561909
See related: EnsemblRapid:ENSRNOG00000038445 AllianceGenome:RGD:1561909
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1561909
Summary: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Orthologous to human RNF225 (ring finger protein 225). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Adrenal (RPKM 10.4), Lung (RPKM 6.2) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 1q21

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (82615787..82618456)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (73543598..73546269)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (65656265..65660272, complement)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH127789 (e-PCR)
- UniSTS:211099

RH138527 (e-PCR)
- UniSTS:220614

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables ubiquitin protein ligase activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in protein ubiquitination	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: RING finger protein 225

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001109334.1 → NP_001102804.1 RING finger protein 225

See identical proteins and their annotated locations for NP_001102804.1

Status: PROVISIONAL

Source sequence(s)

CH474090

UniProtKB/TrEMBL

A6KQM6, D3ZF25

Related

ENSRNOP00000055372.2, ENSRNOT00000058574.5

Conserved Domains (2) summary

cd00162
Location:63 → 110

RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]

cl17238
Location:62 → 114

RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain