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    H2bl1 H2B.L histone variant 1 [ Mus musculus (house mouse) ]

    Gene ID: 69382, updated on 9-Dec-2024

    Summary

    Official Symbol
    H2bl1provided by MGI
    Official Full Name
    H2B.L histone variant 1provided by MGI
    Primary source
    MGI:MGI:1916632
    See related
    Ensembl:ENSMUSG00000045022 AllianceGenome:MGI:1916632
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Subh2bv; 1700024P04Rik
    Summary
    Predicted to enable DNA binding activity. Located in nucleus. Orthologous to human H2BL1P (H2B.L histone variant 1, pseudogene). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See H2bl1 in Genome Data Viewer
    Location:
    13 D1; 13 52.25 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (99120598..99121073, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (98984090..98984565, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35215 Neighboring gene predicted gene, 47052 Neighboring gene predicted gene, 53808 Neighboring gene STARR-seq mESC enhancer starr_35437 Neighboring gene predicted gene, 35279 Neighboring gene STARR-seq mESC enhancer starr_35438 Neighboring gene STARR-seq mESC enhancer starr_35439 Neighboring gene STARR-seq mESC enhancer starr_35441 Neighboring gene predicted gene, 35493

    Genomic regions, transcripts, and products

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 
    • Targeted (2) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
     
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    histone H2B variant L1
    Names
    histone H2B subacrosomal
    histone variant H2bl1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027064.1NP_081340.1  histone H2B variant L1

      See identical proteins and their annotated locations for NP_081340.1

      Status: PROVISIONAL

      Source sequence(s)
      AK006311
      Consensus CDS
      CCDS49342.1
      UniProtKB/Swiss-Prot
      Q9D9Z7
      Related
      ENSMUSP00000053046.6, ENSMUST00000054425.7
      Conserved Domains (2) summary
      pfam00125
      Location:13100
      Histone; Core histone H2A/H2B/H3/H4
      cl23830
      Location:1120
      H2B; Histone H2B

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      99120598..99121073 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)