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    Scand1 SCAN domain-containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 19018, updated on 27-Nov-2024

    Summary

    Official Symbol
    Scand1provided by MGI
    Official Full Name
    SCAN domain-containing 1provided by MGI
    Primary source
    MGI:MGI:1343132
    See related
    Ensembl:ENSMUSG00000046229 AllianceGenome:MGI:1343132
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Leap1; PGC-2; Ppargc2; 2310003H23Rik
    Summary
    Acts upstream of or within positive regulation of DNA-templated transcription. Predicted to be located in nucleus. Is expressed in brain and neural retina. Orthologous to human SCAND1 (SCAN domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in duodenum adult (RPKM 405.3), adrenal adult (RPKM 281.0) and 25 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Scand1 in Genome Data Viewer
    Location:
    2 H1; 2 77.39 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (156153766..156154624, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (156311846..156312704, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 39 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:156005117-156005304 Neighboring gene STARR-positive B cell enhancer ABC_E817 Neighboring gene STARR-seq mESC enhancer starr_06156 Neighboring gene STARR-positive B cell enhancer ABC_E9537 Neighboring gene STARR-seq mESC enhancer starr_06157 Neighboring gene PHD finger protein 20 Neighboring gene STARR-seq mESC enhancer starr_06159 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:156104477-156104678 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:156113998-156114107 Neighboring gene cyclic nucleotide binding domain containing 2 Neighboring gene predicted gene 14251 Neighboring gene programmed cell death 10 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    SCAN domain-containing protein 1
    Names
    leucine-rich-domain inter-acting protein 1
    peroxisome proliferative activated receptor, gamma, coactivator 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_020255.3NP_064651.2  SCAN domain-containing protein 1

      See identical proteins and their annotated locations for NP_064651.2

      Status: VALIDATED

      Source sequence(s)
      AK009115, CA451199, CR519910
      Consensus CDS
      CCDS38298.1
      UniProtKB/TrEMBL
      Q2M4I6, Q9Z0V9
      Related
      ENSMUSP00000105211.4, ENSMUST00000079125.8
      Conserved Domains (1) summary
      pfam02023
      Location:67125
      SCAN; SCAN domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      156153766..156154624 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)