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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001164609.2 → NP_001158081.1 sphingomyelin phosphodiesterase 4 isoform 4
See identical proteins and their annotated locations for NP_001158081.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 4, which is shorter than isoform 1.
- Source sequence(s)
-
AC115733
- Consensus CDS
-
CCDS49780.1
- UniProtKB/TrEMBL
-
A0A338P695
- Related
- ENSMUSP00000087620.5, ENSMUST00000090159.13
- Conserved Domains (1) summary
-
- pfam14724
Location:8 → 752
- mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
-
NM_001164610.2 → NP_001158082.1 sphingomyelin phosphodiesterase 4 isoform 3
See identical proteins and their annotated locations for NP_001158082.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 3, which is shorter than isoform 1.
- Source sequence(s)
-
AC115733
- Consensus CDS
-
CCDS49781.1
- UniProtKB/TrEMBL
-
A0A338P695
- Related
- ENSMUSP00000131867.2, ENSMUST00000163476.10
- Conserved Domains (1) summary
-
- pfam14724
Location:8 → 739
- mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
-
NM_001164611.2 → NP_001158083.1 sphingomyelin phosphodiesterase 4 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 2, which is shorter than isoform 1.
- Source sequence(s)
-
AC115733
- Consensus CDS
-
CCDS49779.1
- UniProtKB/TrEMBL
-
A0A338P695
- Related
- ENSMUSP00000130720.2, ENSMUST00000165363.10
- Conserved Domains (1) summary
-
- pfam14724
Location:8 → 738
- mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
-
NM_001403422.1 → NP_001390351.1 sphingomyelin phosphodiesterase 4 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC115733
- UniProtKB/TrEMBL
-
A0A338P695
-
NM_029945.4 → NP_084221.2 sphingomyelin phosphodiesterase 4 isoform 1
See identical proteins and their annotated locations for NP_084221.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC115733
- Consensus CDS
-
CCDS28009.1
- UniProtKB/Swiss-Prot
- Q3TPE0, Q3TPP1, Q6ZPR5, Q8CBJ5, Q8CD12, Q8CD83, Q8R0J3, Q9CX74
- UniProtKB/TrEMBL
-
A0A338P695
- Related
- ENSMUSP00000006053.7, ENSMUST00000006053.13
- Conserved Domains (1) summary
-
- pfam14724
Location:8 → 768
- mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
RNA
-
NR_175375.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC115733
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000082.7 Reference GRCm39 C57BL/6J
- Range
-
17437218..17462694
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006522725.3 → XP_006522788.1 sphingomyelin phosphodiesterase 4 isoform X4
- UniProtKB/TrEMBL
-
A0A338P735
- Related
- ENSMUSP00000156215.2, ENSMUST00000232271.2
- Conserved Domains (1) summary
-
- pfam14724
Location:81 → 533
- mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
-
XM_030249331.2 → XP_030105191.1 sphingomyelin phosphodiesterase 4 isoform X5
- Conserved Domains (1) summary
-
- pfam14724
Location:35 → 389
- mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
-
XM_030249330.1 → XP_030105190.1 sphingomyelin phosphodiesterase 4 isoform X4
- UniProtKB/TrEMBL
-
A0A338P735
- Conserved Domains (1) summary
-
- pfam14724
Location:81 → 533
- mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
-
XM_006522722.3 → XP_006522785.1 sphingomyelin phosphodiesterase 4 isoform X3
See identical proteins and their annotated locations for XP_006522785.1
- UniProtKB/Swiss-Prot
- Q3TPE0, Q3TPP1, Q6ZPR5, Q8CBJ5, Q8CD12, Q8CD83, Q8R0J3, Q9CX74
- UniProtKB/TrEMBL
-
A0A338P695
- Conserved Domains (1) summary
-
- pfam14724
Location:8 → 768
- mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
-
XM_006522721.4 → XP_006522784.1 sphingomyelin phosphodiesterase 4 isoform X2
- UniProtKB/TrEMBL
-
A0A338P695
- Related
- ENSMUSP00000155897.2, ENSMUST00000231436.2
- Conserved Domains (1) summary
-
- pfam14724
Location:38 → 769
- mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
-
XM_036160179.1 → XP_036016072.1 sphingomyelin phosphodiesterase 4 isoform X3
- UniProtKB/Swiss-Prot
- Q3TPE0, Q3TPP1, Q6ZPR5, Q8CBJ5, Q8CD12, Q8CD83, Q8R0J3, Q9CX74
- UniProtKB/TrEMBL
-
A0A338P695
- Conserved Domains (1) summary
-
- pfam14724
Location:8 → 768
- mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
-
XM_006522720.4 → XP_006522783.1 sphingomyelin phosphodiesterase 4 isoform X1
- UniProtKB/TrEMBL
-
A0A338P695
- Conserved Domains (1) summary
-
- pfam14724
Location:38 → 798
- mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
-
XM_017317160.3 → XP_017172649.1 sphingomyelin phosphodiesterase 4 isoform X5
- Conserved Domains (1) summary
-
- pfam14724
Location:35 → 389
- mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
RNA
-
XR_001781871.3 RNA Sequence
-
XR_001781872.3 RNA Sequence