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    Ctsq cathepsin Q [ Mus musculus (house mouse) ]

    Gene ID: 104002, updated on 27-Dec-2024

    Summary

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    Official Symbol
    Ctsqprovided by MGI
    Official Full Name
    cathepsin Qprovided by MGI
    Primary source
    MGI:MGI:2137385
    See related
    Ensembl:ENSMUSG00000021439 AllianceGenome:MGI:2137385
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1600010J02Rik
    Summary
    Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in protein catabolic process. Predicted to be active in extracellular space and lysosome. Is expressed in extraembryonic component; head; pituitary gland; placenta; and trophoblast giant cell. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward placenta adult (RPKM 51.4) See more
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    Genomic context

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    See Ctsq in Genome Data Viewer
    Location:
    13 B2; 13 32.65 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (61182852..61188411, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (61035038..61040597, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40976 Neighboring gene predicted gene, 40975 Neighboring gene cathepsin J Neighboring gene STARR-seq mESC enhancer starr_34744 Neighboring gene STARR-seq mESC enhancer starr_34745 Neighboring gene zinc finger protein 930 pseudogene Neighboring gene cathepsin R

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The p53-cathepsin axis cooperates with ROS to activate programmed necrotic death upon DNA damage. Tu HC, et al. Proc Natl Acad Sci U S A, 2009 Jan 27. PMID 19144918, Free PMC Article
    2. Cathepsin Q, a novel lysosomal cysteine protease highly expressed in placenta. Sol-Church K, et al. Biochem Biophys Res Commun, 2000 Jan 27. PMID 10673370
    3. Cathepsin gene expression in mouse placenta during the latter half of pregnancy. Ishida M, et al. J Reprod Dev, 2004 Oct. PMID 15514457
    4. PTHrP is essential for normal morphogenetic and functional development of the murine placenta. Duval C, et al. Dev Biol, 2017 Oct 15. PMID 28864069
    5. Diverse subtypes and developmental origins of trophoblast giant cells in the mouse placenta. Simmons DG, et al. Dev Biol, 2007 Apr 15. PMID 17289015

    See all (55) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The p53-cathepsin axis is the quintessential framework underlying necrotic cell death.
      Title: The p53-cathepsin axis cooperates with ROS to activate programmed necrotic death upon DNA damage.
    2. Possible association of cathepsins with placental lactogen-II may play important roles in placental functions during the latter half of pregnancy in mice.
      Title: Cathepsin gene expression in mouse placenta during the latter half of pregnancy.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in proteolysis involved in protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in lysosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    cathepsin Q

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029636.3 → NP_083912.2  cathepsin Q precursor

      See identical proteins and their annotated locations for NP_083912.2

      Status: PROVISIONAL

      Source sequence(s)
      AC160115
      Consensus CDS
      CCDS26584.1
      UniProtKB/TrEMBL
      Q91ZF4
      Related
      ENSMUSP00000021888.8, ENSMUST00000021888.9
      Conserved Domains (2) summary
      smart00848
      Location:29 → 87
      Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
      pfam00112
      Location:125 → 342
      Peptidase_C1; Papain family cysteine protease

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      61182852..61188411 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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