Cypt3 cysteine-rich perinuclear theca 3 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Cypt3provided by MGI
Official Full Name: cysteine-rich perinuclear theca 3provided by MGI
Primary source: MGI:MGI:1916611
See related: Ensembl:ENSMUSG00000048573 AllianceGenome:MGI:1916611
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Ckt1r1; 1700006H02Rik
Expression: Restricted expression toward testis adult (RPKM 51.5) See more
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Genomic context

Location:: X F3; X 68.65 cM

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	X	NC_000086.8 (152341589..152342431)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	X	NC_000086.7 (153558593..153559435)

Chromosome X - NC_000086.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Human VCX/Y, SPANX, and CSAG2 gene families together with the murine SPANX gene and the CYPT family may share a common ancestor.
Title: A shared promoter region suggests a common ancestor for the human VCX/Y, SPANX, and CSAG gene families and the murine CYPT family.

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (2)

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: cysteine-rich perinuclear theca 3

Names: basic protein CKT1R1; cysteine-rich perinuclear theca protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001310716.1 → NP_001297645.1 cysteine-rich perinuclear theca 3 isoform 1

See identical proteins and their annotated locations for NP_001297645.1

Status: VALIDATED

Description

Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).

Source sequence(s)

AL844583, BC048527

Consensus CDS

CCDS81188.1

UniProtKB/TrEMBL

B1AY64, Q3MSD3

Related

ENSMUSP00000108192.2, ENSMUST00000112573.8
NM_173367.3 → NP_775543.2 cysteine-rich perinuclear theca 3 isoform 2

See identical proteins and their annotated locations for NP_775543.2

Status: VALIDATED

Description

Transcript Variant: This variant (2) uses an alternate in-frame splice site in the coding region, compared to variant 1. The encoded protein (isoform 2) is shorter than isoform 1.

Source sequence(s)

AL844583, AV047945, BC048527

Consensus CDS

CCDS30483.1

UniProtKB/TrEMBL

Q3MSD3, Q80ZR9

Related

ENSMUSP00000057687.4, ENSMUST00000056754.4