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    Speer1a spermatogenesis associated glutamate (E)-rich protein 1A [ Mus musculus (house mouse) ]

    Gene ID: 70896, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Speer1aprovided by MGI
    Official Full Name
    spermatogenesis associated glutamate (E)-rich protein 1Aprovided by MGI
    Primary source
    MGI:MGI:1918146
    See related
    Ensembl:ENSMUSG00000095829 AllianceGenome:MGI:1918146
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Speer1; SPEER-1; Speer1-ps1; 4921519H07Rik
    Expression
    Restricted expression toward testis adult (RPKM 36.7) See more
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    Genomic context

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    See Speer1a in Genome Data Viewer
    Location:
    5 A1; 5 3.84 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (11390375..11396240)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (11340408..11346273)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene anaphase-promoting complex subunit 5 pseudogene Neighboring gene predicted gene, 32877 Neighboring gene STARR-positive B cell enhancer mm9_chr5:11341911-11342211 Neighboring gene RIKEN cDNA 1700108N06 gene Neighboring gene anaphase-promoting complex subunit 5 pseudogene Neighboring gene spermatogenesis associated glutamate (E)-rich protein 1F

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. SPEER--a new family of testis-specific genes from the mouse. Spiess AN, et al. Biol Reprod, 2003 Jun. PMID 12606357
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    spermatogenesis associated glutamate (E)-rich protein 1A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001309520.2 → NP_001296449.1  spermatogenesis associated glutamate (E)-rich protein 1A

      Status: PROVISIONAL

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the functional protein.
      Source sequence(s)
      AC140842
      Consensus CDS
      CCDS89879.1
      UniProtKB/TrEMBL
      F6X687, J3QMX3
      Related
      ENSMUSP00000132617.3, ENSMUST00000172106.9
      Conserved Domains (1) summary
      pfam04822
      Location:8 → 91
      Takusan; Takusan

    RNA

    1. NR_001586.3 RNA Sequence

      Status: PROVISIONAL

      Description
      Transcript Variant: This variant (2) uses an alternate 5'-terminal exon compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
      Source sequence(s)
      AK014925, BX639491

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      11390375..11396240
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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