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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001044383.4 → NP_001037848.1 nucleolar transcription factor 1 isoform 2
See identical proteins and their annotated locations for NP_001037848.1
Status: VALIDATED
- Source sequence(s)
-
AL954730
- Consensus CDS
-
CCDS36343.1
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT6
- Related
- ENSMUSP00000102736.3, ENSMUST00000107119.9
- Conserved Domains (2) summary
-
- cd01390
Location:112 → 177
- HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
- pfam14887
Location:442 → 525
- HMG_box_5; HMG (high mobility group) box 5
-
NM_001302954.3 → NP_001289883.1 nucleolar transcription factor 1 isoform 2
See identical proteins and their annotated locations for NP_001289883.1
Status: VALIDATED
- Source sequence(s)
-
AL954730
- Consensus CDS
-
CCDS36343.1
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT6
- Related
- ENSMUSP00000136310.2, ENSMUST00000178839.8
- Conserved Domains (2) summary
-
- cd01390
Location:112 → 177
- HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
- pfam14887
Location:442 → 525
- HMG_box_5; HMG (high mobility group) box 5
-
NM_001302955.3 → NP_001289884.1 nucleolar transcription factor 1 isoform 3
See identical proteins and their annotated locations for NP_001289884.1
Status: VALIDATED
- Source sequence(s)
-
AL954730
- Consensus CDS
-
CCDS79056.1
- UniProtKB/TrEMBL
- A2AWT7, Q9DBH1
- Related
- ENSMUSP00000006754.8, ENSMUST00000006754.14
- Conserved Domains (3) summary
-
- COG5648
Location:311 → 510
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01390
Location:112 → 177
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
- pfam14887
Location:442 → 525
- HMG_box_5; HMG (high mobility group) box 5
-
NM_001362544.2 → NP_001349473.1 nucleolar transcription factor 1 isoform 1
Status: VALIDATED
- Source sequence(s)
-
AL954730
- Consensus CDS
-
CCDS25495.1
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT5
- Related
- ENSMUSP00000133611.2, ENSMUST00000173870.8
- Conserved Domains (3) summary
-
- cd01390
Location:407 → 470
- HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
- pfam14887
Location:479 → 562
- HMG_box_5; HMG (high mobility group) box 5
- pfam00505
Location:112 → 179
- HMG_box; HMG (high mobility group) box
-
NM_001362545.2 → NP_001349474.1 nucleolar transcription factor 1 isoform 1
Status: VALIDATED
- Source sequence(s)
-
AL954730
- Consensus CDS
-
CCDS25495.1
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT5
- Related
- ENSMUSP00000078539.5, ENSMUST00000079589.11
- Conserved Domains (3) summary
-
- cd01390
Location:407 → 470
- HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
- pfam14887
Location:479 → 562
- HMG_box_5; HMG (high mobility group) box 5
- pfam00505
Location:112 → 179
- HMG_box; HMG (high mobility group) box
-
NM_001362547.2 → NP_001349476.1 nucleolar transcription factor 1 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AL954730
- Consensus CDS
-
CCDS36343.1
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT6
- Conserved Domains (2) summary
-
- cd01390
Location:112 → 177
- HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
- pfam14887
Location:442 → 525
- HMG_box_5; HMG (high mobility group) box 5
-
NM_001362548.2 → NP_001349477.1 nucleolar transcription factor 1 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AL954730
- Consensus CDS
-
CCDS36343.1
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT6
- Related
- ENSMUSP00000102734.3, ENSMUST00000107117.9
- Conserved Domains (2) summary
-
- cd01390
Location:112 → 177
- HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
- pfam14887
Location:442 → 525
- HMG_box_5; HMG (high mobility group) box 5
-
NM_001362549.2 → NP_001349478.1 nucleolar transcription factor 1 isoform 4
Status: VALIDATED
- Source sequence(s)
-
AL954730
- Conserved Domains (2) summary
-
- cd01390
Location:308 → 371
- HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
- pfam14887
Location:380 → 464
- HMG_box_5; HMG (high mobility group) box 5
-
NM_001362552.2 → NP_001349481.1 nucleolar transcription factor 1 isoform 7
Status: VALIDATED
- Source sequence(s)
-
AL954730
- Consensus CDS
-
CCDS88262.1
- UniProtKB/TrEMBL
-
E9Q4A8
- Related
- ENSMUSP00000131930.2, ENSMUST00000128016.2
- Conserved Domains (1) summary
-
- cd01390
Location:112 → 158
- HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
-
NM_001404620.1 → NP_001391549.1 nucleolar transcription factor 1 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AL954730
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT6
-
NM_001404621.1 → NP_001391550.1 nucleolar transcription factor 1 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AL954730
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT6
-
NM_001404622.1 → NP_001391551.1 nucleolar transcription factor 1 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AL954730
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT6
-
NM_001404623.1 → NP_001391552.1 nucleolar transcription factor 1 isoform 1
Status: VALIDATED
- Source sequence(s)
-
AL954730
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT5
-
NM_001404624.1 → NP_001391553.1 nucleolar transcription factor 1 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AL954730
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT6
-
NM_001404625.1 → NP_001391554.1 nucleolar transcription factor 1 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AL954730
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT6
-
NM_001404626.1 → NP_001391555.1 nucleolar transcription factor 1 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AL954730
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT6
- Related
- ENSMUSP00000102732.2, ENSMUST00000107115.8
-
NM_001404627.1 → NP_001391556.1 nucleolar transcription factor 1 isoform 1
Status: VALIDATED
- Source sequence(s)
-
AL954730
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT5
- Related
- ENSMUSP00000102740.4, ENSMUST00000107123.10
-
NM_001404628.1 → NP_001391557.1 nucleolar transcription factor 1 isoform 1
Status: VALIDATED
- Source sequence(s)
-
AL954730
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT5
-
NM_001404629.1 → NP_001391558.1 nucleolar transcription factor 1 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AL954730
- UniProtKB/TrEMBL
- A2AWT7, Q9DBH1
-
NM_001404630.1 → NP_001391559.1 nucleolar transcription factor 1 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AL954730
- UniProtKB/TrEMBL
- A2AWT7, Q9DBH1
-
NM_001404633.1 → NP_001391562.1 nucleolar transcription factor 1 isoform 8
Status: VALIDATED
- Source sequence(s)
-
AL954730
- UniProtKB/TrEMBL
-
Q9DBH1
-
NM_011551.8 → NP_035681.2 nucleolar transcription factor 1 isoform 1
See identical proteins and their annotated locations for NP_035681.2
Status: VALIDATED
- Source sequence(s)
-
AL954730
- Consensus CDS
-
CCDS25495.1
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT5
- Related
- ENSMUSP00000133844.2, ENSMUST00000174302.8
- Conserved Domains (3) summary
-
- cd01390
Location:407 → 470
- HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
- pfam14887
Location:479 → 562
- HMG_box_5; HMG (high mobility group) box 5
- pfam00505
Location:112 → 179
- HMG_box; HMG (high mobility group) box
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000077.7 Reference GRCm39 C57BL/6J
- Range
-
102195393..102214738 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036156510.1 → XP_036012403.1 nucleolar transcription factor 1 isoform X1
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT5
- Conserved Domains (3) summary
-
- cd01390
Location:407 → 470
- HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
- pfam14887
Location:479 → 562
- HMG_box_5; HMG (high mobility group) box 5
- pfam00505
Location:112 → 179
- HMG_box; HMG (high mobility group) box
-
XM_030245777.2 → XP_030101637.1 nucleolar transcription factor 1 isoform X1
- UniProtKB/Swiss-Prot
-
P25976
- UniProtKB/TrEMBL
-
A2AWT5
- Conserved Domains (3) summary
-
- cd01390
Location:407 → 470
- HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
- pfam14887
Location:479 → 562
- HMG_box_5; HMG (high mobility group) box 5
- pfam00505
Location:112 → 179
- HMG_box; HMG (high mobility group) box
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001362550.1: Suppressed sequence
- Description
- NM_001362550.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
-
NM_001362551.1: Suppressed sequence
- Description
- NM_001362551.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.