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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_046601.1 RefSeqGene
- Range
-
4972..61742
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001194937.2 → NP_001181866.1 pogo transposable element with ZNF domain isoform 4
See identical proteins and their annotated locations for NP_001181866.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses an alternate in-frame splice site to variant 1. This results in a shorter protein (isoform 4), compared to isoform 1.
- Source sequence(s)
-
AB007930, AJ242979, AK300307, AL589764, BX537838, BX649163
- Consensus CDS
-
CCDS53366.1
- UniProtKB/TrEMBL
-
A0AA34QVU4
- Related
- ENSP00000386836.1, ENST00000409503.5
- Conserved Domains (5) summary
-
- smart00674
Location:1012 → 1073
- CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
- sd00017
Location:523 → 544
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00020
Location:487 → 520
- ZF_C2H2; C2H2 Zn finger [structural motif]
- cl21549
Location:1147 → 1271
- rve; Integrase core domain
- cl27427
Location:404 → 453
- AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
-
NM_001194938.2 → NP_001181867.1 pogo transposable element with ZNF domain isoform 5
See identical proteins and their annotated locations for NP_001181867.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks an in-frame exon and uses an alternate in-frame splice site to variant 1. This results in a shorter protein (isoform 5), compared to isoform 1.
- Source sequence(s)
-
AB007930, AJ242979, AK300307, AK302501, AL589764, BX537838, BX649163
- Consensus CDS
-
CCDS53365.1
- UniProtKB/TrEMBL
-
A0AA34QVU4
- Related
- ENSP00000431259.1, ENST00000531094.5
- Conserved Domains (5) summary
-
- smart00674
Location:959 → 1020
- CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
- sd00017
Location:470 → 491
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00020
Location:434 → 467
- ZF_C2H2; C2H2 Zn finger [structural motif]
- cl21549
Location:1094 → 1218
- rve; Integrase core domain
- cl27427
Location:351 → 400
- AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
-
NM_001410860.1 → NP_001397789.1 pogo transposable element with ZNF domain isoform 6
Status: REVIEWED
- Source sequence(s)
-
AL589764
- Consensus CDS
-
CCDS91052.1
- UniProtKB/TrEMBL
- A0A8V8TQ67, A0AA34QVU4
- Related
- ENSP00000515214.1, ENST00000703168.1
-
NM_015100.4 → NP_055915.2 pogo transposable element with ZNF domain isoform 1
See identical proteins and their annotated locations for NP_055915.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AB007930, AJ242979, AL589764, BX537838, BX649163
- Consensus CDS
-
CCDS997.1
- UniProtKB/Swiss-Prot
- B4DTP8, B4DYL9, B7ZBY5, E9PM80, O75049, Q3LIC4, Q5SZS1, Q5SZS2, Q5SZS3, Q5SZS4, Q7Z3K3, Q8TDZ7, Q9Y4X7
- UniProtKB/TrEMBL
-
A0AA34QVU4
- Related
- ENSP00000271715.2, ENST00000271715.7
- Conserved Domains (6) summary
-
- smart00674
Location:1021 → 1082
- CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
- sd00017
Location:532 → 553
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00020
Location:496 → 529
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam09606
Location:101 → 357
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- cl21549
Location:1156 → 1280
- rve; Integrase core domain
- cl27427
Location:271 → 462
- AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
-
NM_145796.4 → NP_665739.3 pogo transposable element with ZNF domain isoform 3
See identical proteins and their annotated locations for NP_665739.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks two in-frame exons compared to variant 1. The resulting isoform (3) is shorter than isoform 1.
- Source sequence(s)
-
AB007930, AJ242979, AK300307, AL589764, BX537561, BX537838, BX649163
- Consensus CDS
-
CCDS44222.2
- UniProtKB/TrEMBL
-
A0AA34QVU4
- Related
- ENSP00000357856.2, ENST00000368863.6
- Conserved Domains (5) summary
-
- smart00674
Location:926 → 987
- CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
- sd00017
Location:437 → 458
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00020
Location:401 → 434
- ZF_C2H2; C2H2 Zn finger [structural motif]
- cl21549
Location:1061 → 1185
- rve; Integrase core domain
- cl27427
Location:180 → 367
- AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
-
NM_207171.2 → NP_997054.1 pogo transposable element with ZNF domain isoform 2
See identical proteins and their annotated locations for NP_997054.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and lacks an in-frame exon compared to variant 1. The resulting isoform (2) is shorter than isoform 1.
- Source sequence(s)
-
AB007930, AL589764, BX537561, BX649163
- Consensus CDS
-
CCDS998.1
- UniProtKB/TrEMBL
-
A0AA34QVU4
- Related
-
ENST00000358476.7
- Conserved Domains (6) summary
-
- smart00674
Location:968 → 1029
- CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
- sd00017
Location:479 → 500
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00020
Location:443 → 476
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam09606
Location:48 → 304
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- cl21549
Location:1103 → 1227
- rve; Integrase core domain
- cl27427
Location:218 → 409
- AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
151402724..151459494 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005245005.3 → XP_005245062.1 pogo transposable element with ZNF domain isoform X5
See identical proteins and their annotated locations for XP_005245062.1
- UniProtKB/TrEMBL
-
A0AA34QVU4
- Related
- ENSP00000376484.1, ENST00000392723.6
- Conserved Domains (6) summary
-
- smart00674
Location:968 → 1029
- CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
- sd00017
Location:479 → 500
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00020
Location:443 → 476
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam09606
Location:48 → 304
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- cl21549
Location:1103 → 1227
- rve; Integrase core domain
- cl27427
Location:218 → 409
- AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
-
XM_047450068.1 → XP_047306024.1 pogo transposable element with ZNF domain isoform X6
- UniProtKB/TrEMBL
-
A0AA34QVU4
-
XM_017000748.2 → XP_016856237.2 pogo transposable element with ZNF domain isoform X4
- UniProtKB/TrEMBL
-
A0AA34QVU4
-
XM_047450065.1 → XP_047306021.1 pogo transposable element with ZNF domain isoform X2
- UniProtKB/TrEMBL
-
A0AA34QVU4
-
XM_047450069.1 → XP_047306025.1 pogo transposable element with ZNF domain isoform X7
- UniProtKB/TrEMBL
-
A0AA34QVU4
-
XM_017000746.2 → XP_016856235.1 pogo transposable element with ZNF domain isoform X3
- UniProtKB/TrEMBL
-
A0AA34QVU4
- Conserved Domains (5) summary
-
- smart00674
Location:1012 → 1073
- CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
- sd00017
Location:523 → 544
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00020
Location:487 → 520
- ZF_C2H2; C2H2 Zn finger [structural motif]
- cl21549
Location:1147 → 1271
- rve; Integrase core domain
- cl27427
Location:404 → 453
- AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
-
XM_005245000.5 → XP_005245057.1 pogo transposable element with ZNF domain isoform X1
See identical proteins and their annotated locations for XP_005245057.1
- UniProtKB/Swiss-Prot
- B4DTP8, B4DYL9, B7ZBY5, E9PM80, O75049, Q3LIC4, Q5SZS1, Q5SZS2, Q5SZS3, Q5SZS4, Q7Z3K3, Q8TDZ7, Q9Y4X7
- UniProtKB/TrEMBL
-
A0AA34QVU4
- Conserved Domains (6) summary
-
- smart00674
Location:1021 → 1082
- CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
- sd00017
Location:532 → 553
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00020
Location:496 → 529
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam09606
Location:101 → 357
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- cl21549
Location:1156 → 1280
- rve; Integrase core domain
- cl27427
Location:271 → 462
- AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
-
XM_047450064.1 → XP_047306020.1 pogo transposable element with ZNF domain isoform X1
- UniProtKB/Swiss-Prot
- B4DTP8, B4DYL9, B7ZBY5, E9PM80, O75049, Q3LIC4, Q5SZS1, Q5SZS2, Q5SZS3, Q5SZS4, Q7Z3K3, Q8TDZ7, Q9Y4X7
- UniProtKB/TrEMBL
-
A0AA34QVU4
- Related
- ENSP00000390156.2, ENST00000439756.2
-
XM_047450070.1 → XP_047306026.1 pogo transposable element with ZNF domain isoform X8
-
XM_047450074.1 → XP_047306030.1 pogo transposable element with ZNF domain isoform X9
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
150526433..150583190 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054335324.1 → XP_054191299.1 pogo transposable element with ZNF domain isoform X5
- UniProtKB/TrEMBL
-
A0AA34QVU4
-
XM_054335323.1 → XP_054191298.1 pogo transposable element with ZNF domain isoform X4
- UniProtKB/TrEMBL
-
A0AA34QVU4
-
XM_054335321.1 → XP_054191296.1 pogo transposable element with ZNF domain isoform X2
- UniProtKB/TrEMBL
-
A0AA34QVU4
-
XM_054335325.1 → XP_054191300.1 pogo transposable element with ZNF domain isoform X6
- UniProtKB/TrEMBL
-
A0AA34QVU4
-
XM_054335326.1 → XP_054191301.1 pogo transposable element with ZNF domain isoform X7
- UniProtKB/TrEMBL
-
A0AA34QVU4
-
XM_054335322.1 → XP_054191297.1 pogo transposable element with ZNF domain isoform X3
- UniProtKB/TrEMBL
-
A0AA34QVU4
-
XM_054335319.1 → XP_054191294.1 pogo transposable element with ZNF domain isoform X1
- UniProtKB/Swiss-Prot
- B4DTP8, B4DYL9, B7ZBY5, E9PM80, O75049, Q3LIC4, Q5SZS1, Q5SZS2, Q5SZS3, Q5SZS4, Q7Z3K3, Q8TDZ7, Q9Y4X7
- UniProtKB/TrEMBL
-
A0AA34QVU4
-
XM_054335320.1 → XP_054191295.1 pogo transposable element with ZNF domain isoform X1
- UniProtKB/Swiss-Prot
- B4DTP8, B4DYL9, B7ZBY5, E9PM80, O75049, Q3LIC4, Q5SZS1, Q5SZS2, Q5SZS3, Q5SZS4, Q7Z3K3, Q8TDZ7, Q9Y4X7
- UniProtKB/TrEMBL
-
A0AA34QVU4
-
XM_054335327.1 → XP_054191302.1 pogo transposable element with ZNF domain isoform X10
- UniProtKB/TrEMBL
-
A0AA34QVU4
-
XM_054335328.1 → XP_054191303.1 pogo transposable element with ZNF domain isoform X8
-
XM_054335329.1 → XP_054191304.1 pogo transposable element with ZNF domain isoform X9