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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001122949.3 → NP_001116421.1 thrombopoietin receptor isoform 1 precursor
See identical proteins and their annotated locations for NP_001116421.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1, also known as c-mpl-I).
- Source sequence(s)
-
AL627212
- Consensus CDS
-
CCDS51284.1
- UniProtKB/TrEMBL
- A2A9D4, Q3ZB68
- Related
- ENSMUSP00000006556.5, ENSMUST00000006556.11
- Conserved Domains (2) summary
-
- cd00063
Location:395 → 484
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam09067
Location:25 → 128
- EpoR_lig-bind; Erythropoietin receptor, ligand binding
-
NM_001285496.2 → NP_001272425.1 thrombopoietin receptor isoform 3 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1, resulting in an isoform (3, also known as c-mpl-II) that is shorter than isoform 1.
- Source sequence(s)
-
AL627212
- UniProtKB/TrEMBL
-
Q925F5
- Related
- ENSMUSP00000101983.2, ENSMUST00000106375.2
- Conserved Domains (2) summary
-
- cd00063
Location:335 → 424
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam09067
Location:25 → 128
- EpoR_lig-bind; Erythropoietin receptor, ligand binding
-
NM_001285497.2 → NP_001272426.1 thrombopoietin receptor isoform 4 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks two alternate exons, which results in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (4) has a distinct C-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AL627212
- UniProtKB/TrEMBL
-
E9Q7U5
- Related
- ENSMUSP00000130167.3, ENSMUST00000168404.9
- Conserved Domains (1) summary
-
- pfam09067
Location:25 → 128
- EpoR_lig-bind; Erythropoietin receptor, ligand binding
-
NM_010823.4 → NP_034953.2 thrombopoietin receptor isoform 2 precursor
See identical proteins and their annotated locations for NP_034953.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1, resulting in an isoform (2) that is shorter than isoform 1.
- Source sequence(s)
-
AL627212
- Consensus CDS
-
CCDS18552.1
- UniProtKB/Swiss-Prot
- A6H8H6, Q08351, Q8BRX0
- UniProtKB/TrEMBL
-
Q3ZB69
- Related
- ENSMUSP00000099732.4, ENSMUST00000102671.10
- Conserved Domains (2) summary
-
- cd00063
Location:387 → 476
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam09067
Location:25 → 128
- EpoR_lig-bind; Erythropoietin receptor, ligand binding
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000070.7 Reference GRCm39 C57BL/6J
- Range
-
118299609..118314771 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011240468.3 → XP_011238770.1 thrombopoietin receptor isoform X1
- Conserved Domains (1) summary
-
- cd00063
Location:114 → 203
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
RNA
-
XR_004941829.1 RNA Sequence