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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001267620.1 → NP_001254549.1 tRNA endonuclease ANKZF1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks several 3' exons but includes an alternate 3' exon, and it thus differs in the 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) has a distinct and shorter C-terminus, compared to isoform 1.
- Source sequence(s)
-
AI425962, BC051449, CN717456
- Conserved Domains (2) summary
-
- smart00451
Location:93 → 127
- ZnF_U1; U1-like zinc finger
- sd00020
Location:98 → 120
- ZF_C2H2; C2H2 Zn finger [structural motif]
-
NM_001404903.1 → NP_001391832.1 tRNA endonuclease ANKZF1 isoform 5
Status: VALIDATED
- Source sequence(s)
-
AC166150, FQ976561
- UniProtKB/Swiss-Prot
- B9EKG0, Q80UU1, Q9CZF5
-
NM_001404904.1 → NP_001391833.1 tRNA endonuclease ANKZF1 isoform 6
Status: VALIDATED
- Source sequence(s)
-
AC166150, FQ976561
- UniProtKB/Swiss-Prot
- B9EKG0, Q80UU1, Q9CZF5
-
NM_001404905.1 → NP_001391834.1 tRNA endonuclease ANKZF1 isoform 7
Status: VALIDATED
- Source sequence(s)
-
AC166150, FQ976561
- UniProtKB/Swiss-Prot
- B9EKG0, Q80UU1, Q9CZF5
-
NM_001404906.1 → NP_001391835.1 tRNA endonuclease ANKZF1 isoform 8
Status: VALIDATED
- Source sequence(s)
-
AC166150, FQ976561
- UniProtKB/Swiss-Prot
- B9EKG0, Q80UU1, Q9CZF5
-
NM_001404907.1 → NP_001391836.1 tRNA endonuclease ANKZF1 isoform 9
Status: VALIDATED
- Source sequence(s)
-
AC166150, FQ976561
- UniProtKB/Swiss-Prot
- B9EKG0, Q80UU1, Q9CZF5
-
NM_026187.5 → NP_080463.3 tRNA endonuclease ANKZF1 isoform 1
See identical proteins and their annotated locations for NP_080463.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1).
- Source sequence(s)
-
AC166150, AW536302, BU054541, BU755641, CN717456, CX232548, DV062487
- Consensus CDS
-
CCDS56632.1
- UniProtKB/Swiss-Prot
- B9EKG0, Q80UU1, Q9CZF5
- UniProtKB/TrEMBL
-
J3QM81
- Related
- ENSMUSP00000136163.2, ENSMUST00000152233.9
- Conserved Domains (4) summary
-
- cd00204
Location:520 → 600
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- sd00020
Location:98 → 120
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam12796
Location:520 → 587
- Ank_2; Ankyrin repeats (3 copies)
- sd00045
Location:556 → 587
- ANK; ANK repeat [structural motif]
RNA
-
NR_051998.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate splice site in an internal exon, compared to variant 1. This variant is represented as non-coding because use of the expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC166150, BU755641, CN717456
- Related
-
ENSMUST00000145459.9
-
NR_051999.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an exon in the 5' region and several exons in the 3' region, but includes an alternate 3' exon, compared to variant 1. This variant is represented as non-coding because use of the expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AI425962, AK084573, CN717456
- Related
-
ENSMUST00000134378.9
-
NR_175880.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC166150, FQ976561
-
NR_175881.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC166150, FQ976561
-
NR_175882.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC166150, FQ976561
-
NR_175883.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC166150, FQ976561
-
NR_175884.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC166150, FQ976561
-
NR_175885.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC166150, FQ976561
-
NR_175886.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC166150, FQ976561
-
NR_175887.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC166150, FQ976561
-
NR_175888.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC166150, FQ976561
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000067.7 Reference GRCm39 C57BL/6J
- Range
-
75168794..75176031
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006496507.2 → XP_006496570.1 tRNA endonuclease ANKZF1 isoform X1
- UniProtKB/Swiss-Prot
- B9EKG0, Q80UU1, Q9CZF5
- Conserved Domains (7) summary
-
- PTZ00322
Location:557 → 629
- PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
- sd00020
Location:98 → 120
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00045
Location:556 → 587
- ANK; ANK repeat [structural motif]
- pfam00023
Location:557 → 587
- Ank; Ankyrin repeat
- pfam12796
Location:520 → 587
- Ank_2; Ankyrin repeats (3 copies)
- pfam18716
Location:773 → 813
- VATC; Vms1-associating treble clef domain
- pfam18826
Location:231 → 375
- bVLRF1; bacteroidetes VLRF1 release factor
-
XM_036152358.1 → XP_036008251.1 tRNA endonuclease ANKZF1 isoform X4
- Conserved Domains (6) summary
-
- PTZ00322
Location:264 → 336
- PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
- sd00045
Location:263 → 294
- ANK; ANK repeat [structural motif]
- pfam00023
Location:264 → 294
- Ank; Ankyrin repeat
- pfam12796
Location:227 → 294
- Ank_2; Ankyrin repeats (3 copies)
- pfam18716
Location:416 → 453
- VATC; Vms1-associating treble clef domain
- pfam18826
Location:1 → 82
- bVLRF1; bacteroidetes VLRF1 release factor
-
XM_036152357.1 → XP_036008250.1 tRNA endonuclease ANKZF1 isoform X2
- Conserved Domains (6) summary
-
- PTZ00322
Location:323 → 395
- PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
- sd00045
Location:322 → 353
- ANK; ANK repeat [structural motif]
- pfam00023
Location:323 → 353
- Ank; Ankyrin repeat
- pfam12796
Location:286 → 353
- Ank_2; Ankyrin repeats (3 copies)
- pfam18716
Location:539 → 578
- VATC; Vms1-associating treble clef domain
- pfam18826
Location:1 → 141
- bVLRF1; bacteroidetes VLRF1 release factor
-
XM_011238696.2 → XP_011236998.1 tRNA endonuclease ANKZF1 isoform X2
See identical proteins and their annotated locations for XP_011236998.1
- Conserved Domains (6) summary
-
- PTZ00322
Location:323 → 395
- PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
- sd00045
Location:322 → 353
- ANK; ANK repeat [structural motif]
- pfam00023
Location:323 → 353
- Ank; Ankyrin repeat
- pfam12796
Location:286 → 353
- Ank_2; Ankyrin repeats (3 copies)
- pfam18716
Location:539 → 578
- VATC; Vms1-associating treble clef domain
- pfam18826
Location:1 → 141
- bVLRF1; bacteroidetes VLRF1 release factor
-
XM_030255491.1 → XP_030111351.1 tRNA endonuclease ANKZF1 isoform X3
- Conserved Domains (6) summary
-
- PTZ00322
Location:264 → 336
- PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
- sd00045
Location:263 → 294
- ANK; ANK repeat [structural motif]
- pfam00023
Location:264 → 294
- Ank; Ankyrin repeat
- pfam12796
Location:227 → 294
- Ank_2; Ankyrin repeats (3 copies)
- pfam18716
Location:480 → 520
- VATC; Vms1-associating treble clef domain
- pfam18826
Location:1 → 82
- bVLRF1; bacteroidetes VLRF1 release factor
-
XM_036152354.1 → XP_036008247.1 tRNA endonuclease ANKZF1 isoform X2
- Conserved Domains (6) summary
-
- PTZ00322
Location:323 → 395
- PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
- sd00045
Location:322 → 353
- ANK; ANK repeat [structural motif]
- pfam00023
Location:323 → 353
- Ank; Ankyrin repeat
- pfam12796
Location:286 → 353
- Ank_2; Ankyrin repeats (3 copies)
- pfam18716
Location:539 → 578
- VATC; Vms1-associating treble clef domain
- pfam18826
Location:1 → 141
- bVLRF1; bacteroidetes VLRF1 release factor
-
XM_036152348.1 → XP_036008241.1 tRNA endonuclease ANKZF1 isoform X2
- Conserved Domains (6) summary
-
- PTZ00322
Location:323 → 395
- PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
- sd00045
Location:322 → 353
- ANK; ANK repeat [structural motif]
- pfam00023
Location:323 → 353
- Ank; Ankyrin repeat
- pfam12796
Location:286 → 353
- Ank_2; Ankyrin repeats (3 copies)
- pfam18716
Location:539 → 578
- VATC; Vms1-associating treble clef domain
- pfam18826
Location:1 → 141
- bVLRF1; bacteroidetes VLRF1 release factor
RNA
-
XR_004933624.1 RNA Sequence
- Related
-
ENSMUST00000131788.9
-
XR_003956227.2 RNA Sequence