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    CFL1P1 cofilin 1 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 142913, updated on 10-Dec-2024

    Summary

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    Official Symbol
    CFL1P1provided by HGNC
    Official Full Name
    cofilin 1 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:28560
    See related
    Ensembl:ENSG00000290782 AllianceGenome:HGNC:28560
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CFLP1
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See CFL1P1 in Genome Data Viewer
    Location:
    10q23.31
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (87818313..87845612)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (88702221..88729514)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (89578070..89605369)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene 3'-phosphoadenosine 5'-phosphosulfate synthase 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:89503239-89503738 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3712 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:89526475-89526686 Neighboring gene uncharacterized LOC124902476 Neighboring gene ATPase family AAA domain containing 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2584 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3713 Neighboring gene Sharpr-MPRA regulatory region 3344 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:89602409-89603608 Neighboring gene RNA, 7SL, cytoplasmic 78, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3715 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3716 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2585 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2586 Neighboring gene killin, p53 regulated DNA replication inhibitor Neighboring gene phosphatase and tensin homolog Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2587 Neighboring gene ribosomal protein L11 pseudogene 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • cofilin 1 (non-muscle) pseudogene 1
    • cofilin pseudogene 1

    Clone Names

    • MGC35136

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028492.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC031631
      Related
      ENST00000438248.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      87818313..87845612
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_013171807.1 Reference GRCh38.p14 PATCHES

      Range
      34135..61434
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      88702221..88729514
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_004788.2: Suppressed sequence

      Description
      NG_004788.2: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.

    2. NM_152427.1: Suppressed sequence

      Description
      NM_152427.1: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials