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    Vmn1r1 vomeronasal 1 receptor 1 [ Mus musculus (house mouse) ]

    Gene ID: 625823, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Vmn1r1provided by MGI
    Official Full Name
    vomeronasal 1 receptor 1provided by MGI
    Primary source
    MGI:MGI:3647849
    See related
    Ensembl:ENSMUSG00000091013 AllianceGenome:MGI:3647849
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm6628; EG625823
    Summary
    Orthologous to human VN1R17P (vomeronasal 1 receptor 17 pseudogene). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Vmn1r1 in Genome Data Viewer
    Location:
    1 H5; 1 84.93 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (181984743..181985663, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (182157178..182158098, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39719 Neighboring gene predicted gene, 33725 Neighboring gene STARR-positive B cell enhancer ABC_E7783 Neighboring gene STARR-positive B cell enhancer ABC_E11700 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E3346 Neighboring gene signal recognition particle 9 Neighboring gene STARR-seq mESC enhancer starr_03268 Neighboring gene STARR-seq mESC enhancer starr_03269 Neighboring gene STARR-seq mESC enhancer starr_03270 Neighboring gene STARR-seq mESC enhancer starr_03273 Neighboring gene STARR-seq mESC enhancer starr_03274 Neighboring gene STARR-seq mESC enhancer starr_03276 Neighboring gene predicted gene, 33887 Neighboring gene delta 4-desaturase, sphingolipid 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome. Amid C, et al. BMC Genomics, 2009 Dec 15. PMID 20003482, Free PMC Article
    2. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    vomeronasal type-1 receptor A16
    Names
    vomernasal 1 receptor Vmn1r1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001166728.1 → NP_001160200.1  vomeronasal type-1 receptor A16

      Status: PROVISIONAL

      Source sequence(s)
      AC122433
      Consensus CDS
      CCDS48475.1
      UniProtKB/TrEMBL
      E9PVR6
      Related
      ENSMUSP00000133035.3, ENSMUST00000169123.4
      Conserved Domains (1) summary
      pfam03402
      Location:42 → 301
      V1R; Vomeronasal organ pheromone receptor family, V1R

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      181984743..181985663 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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