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    Gm5535 predicted gene 5535 [ Mus musculus (house mouse) ]

    Gene ID: 433481, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm5535provided by MGI
    Official Full Name
    predicted gene 5535provided by MGI
    Primary source
    MGI:MGI:3645019
    See related
    Ensembl:ENSMUSG00000074758 AllianceGenome:MGI:3645019
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG433481
    Expression
    Biased expression in large intestine adult (RPKM 1.3), cerebellum adult (RPKM 0.3) and 6 other tissues See more
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    Genomic context

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    See Gm5535 in Genome Data Viewer
    Location:
    2 G1; 2 70.95 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (144015070..144031210, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (144173150..144189290, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene barrier to autointegration factor 2, opposite strand Neighboring gene STARR-positive B cell enhancer ABC_E1601 Neighboring gene predicted gene, 53188 Neighboring gene STARR-seq mESC enhancer starr_05904 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr2:143993097-143993397 Neighboring gene STARR-positive B cell enhancer mm9_chr2:143995491-143995792 Neighboring gene STARR-positive B cell enhancer ABC_E1602 Neighboring gene STARR-seq mESC enhancer starr_05906 Neighboring gene STARR-positive B cell enhancer ABC_E11163 Neighboring gene STARR-positive B cell enhancer ABC_E5993 Neighboring gene STARR-positive B cell enhancer ABC_E9535 Neighboring gene STARR-positive B cell enhancer ABC_E1256 Neighboring gene STARR-positive B cell enhancer ABC_E7865 Neighboring gene STARR-seq mESC enhancer starr_05907 Neighboring gene STARR-positive B cell enhancer ABC_E4507 Neighboring gene sorting nexin 5 Neighboring gene predicted gene, 26165 Neighboring gene small nucleolar RNA, C/D box 17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_136884.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL824710, AL928891
      Related
      ENSMUST00000099292.9

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      144015070..144031210 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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