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    Tslrn1 testis specific long noncoding RNA 1 [ Mus musculus (house mouse) ]

    Gene ID: 75545, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tslrn1provided by MGI
    Official Full Name
    testis specific long noncoding RNA 1provided by MGI
    Primary source
    MGI:MGI:1922795
    See related
    Ensembl:ENSMUSG00000085757 AllianceGenome:MGI:1922795
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700019B21Rik
    Summary
    Involved in spermatogenesis. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward placenta adult (RPKM 9.9) See more
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    Genomic context

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    See Tslrn1 in Genome Data Viewer
    Location:
    X A6; X 34.57 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (61554145..61570617, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (62510539..62527011, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene N-myristoyltransferase 1 pseudogene Neighboring gene RIKEN cDNA 4931400O07 gene Neighboring gene STARR-seq mESC enhancer starr_47259 Neighboring gene STARR-seq mESC enhancer starr_47260 Neighboring gene tumor necrosis factor, alpha-induced protein 1 (endothelial) pseudogene Neighboring gene tumor necrosis factor, alpha-induced protein 1 (endothelial) pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Dynamic expression of long noncoding RNAs reveals their potential roles in spermatogenesis and fertility. Wichman L, et al. Biol Reprod, 2017 Aug 1. PMID 29044429
    2. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
    3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045442.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is the longer transcript.
      Source sequence(s)
      AL731732
      Related
      ENSMUST00000129479.3

    2. NR_045443.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' exon, compared to variant 1.
      Source sequence(s)
      AK006108
      Related
      ENSMUST00000294992.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      61554145..61570617 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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