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    trappc13 trafficking protein particle complex subunit 13 [ Danio rerio (zebrafish) ]

    Gene ID: 321203, updated on 9-Dec-2024

    Summary

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    Official Symbol
    trappc13provided by ZNC
    Official Full Name
    trafficking protein particle complex subunit 13provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-9775
    See related
    Ensembl:ENSDARG00000033768 AllianceGenome:ZFIN:ZDB-GENE-030131-9775
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cb318; sb:cb318; zgc:73187; wu:fa04a08
    Summary
    Predicted to be part of TRAPPIII protein complex. Is expressed in notochord. Orthologous to human TRAPPC13 (trafficking protein particle complex subunit 13). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See trappc13 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (15340769..15382142)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (15382649..15424023)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene potassium channel, subfamily V, member 2a Neighboring gene pumilio RNA-binding family member 3 Neighboring gene small glutamine rich tetratricopeptide repeat co-chaperone beta Neighboring gene neurolysin (metallopeptidase M3 family) Neighboring gene erbb2 interacting protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    part_of TRAPPIII protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    trafficking protein particle complex subunit 13
    Names
    UPF0533 protein C5orf44 homolog
    trafficking protein particle complex 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001244643.1 → NP_001231572.1  trafficking protein particle complex subunit 13 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      EH451323, EH462199, EH541314, EH553803, EH598931
      UniProtKB/TrEMBL
      A0A0R4IMM3, A0A8M1NZ69
      Related
      ENSDARP00000135625.1, ENSDART00000168909.2
      Conserved Domains (1) summary
      pfam06159
      Location:65 → 298
      DUF974; Protein of unknown function (DUF974)

    2. NM_199538.2 → NP_955832.2  trafficking protein particle complex subunit 13 isoform 2

      See identical proteins and their annotated locations for NP_955832.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon in the coding region compared to variant 1. The resulting protein (isoform 2) is shorter but has the same N- and C-termini compared to isoform 1.
      Source sequence(s)
      EH462199, EH541314, EH553803, EH581545, EH598931
      UniProtKB/Swiss-Prot
      Q6PBY7
      Related
      ENSDARP00000046273.4, ENSDART00000046274.6
      Conserved Domains (1) summary
      pfam06159
      Location:65 → 292
      DUF974; Protein of unknown function (DUF974)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      15340769..15382142
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005155559.5 → XP_005155616.1  trafficking protein particle complex subunit 13 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B295
      Conserved Domains (1) summary
      pfam06159
      Location:65 → 297
      DUF974; Protein of unknown function (DUF974)

    2. XM_005155560.5 → XP_005155617.1  trafficking protein particle complex subunit 13 isoform X2

      UniProtKB/TrEMBL
      A0A8M2B1S2
      Conserved Domains (1) summary
      pfam06159
      Location:65 → 291
      DUF974; Protein of unknown function (DUF974)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6PBY7.2 GenPept UniProtKB/Swiss-Prot:Q6PBY7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.