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    spata20 spermatogenesis associated 20 [ Danio rerio (zebrafish) ]

    Gene ID: 567862, updated on 4-Jan-2025

    Summary

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    Official Symbol
    spata20provided by ZNC
    Official Full Name
    spermatogenesis associated 20provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-7269
    See related
    Ensembl:ENSDARG00000013880 AllianceGenome:ZFIN:ZDB-GENE-030131-7269
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj02d07; wu:fj02d07
    Summary
    Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human SPATA20 (spermatogenesis associated 20). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    human mouse all
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    Genomic context

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    See spata20 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (27589634..27665591)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (27498211..27574231)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene ETS variant transcription factor 4 Neighboring gene DEAH (Asp-Glu-Ala-His) box polypeptide 8 Neighboring gene uncharacterized LOC137496820 Neighboring gene uncharacterized LOC137496821

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Recurrent gene loss correlates with the evolution of stomach phenotypes in gnathostome history. Castro LF, et al. Proc Biol Sci, 2014 Jan 22. PMID 24307675, Free PMC Article
    2. Zebrafish Collagen Type I: Molecular and Biochemical Characterization of the Major Structural Protein in Bone and Skin. Gistelinck C, et al. Sci Rep, 2016 Feb 15. PMID 26876635, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    spermatogenesis-associated protein 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      27589634..27665591
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001920553.7 → XP_001920588.3  spermatogenesis-associated protein 20 isoform X1

      UniProtKB/TrEMBL
      A0A8M1QL85, E7F7E2
      Related
      ENSDARP00000066287.4, ENSDART00000066288.6
      Conserved Domains (2) summary
      COG1331
      Location:89 → 818
      YyaL; Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains [General function prediction only]
      pfam03190
      Location:94 → 256
      Thioredox_DsbH; Protein of unknown function, DUF255

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394847.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      520484..558546
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021472557.2 → XP_021328232.1  spermatogenesis-associated protein 20 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PAX0
      Conserved Domains (1) summary
      COG1331
      Location:89 → 763
      YyaL; Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains [General function prediction only]
    Nucleotide Protein Strain
    Heading Accession and Version

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