nfkbib nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: nfkbibprovided by ZNC
Official Full Name: nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, betaprovided by ZNC
Primary source: ZFIN:ZDB-GENE-070705-529
See related: Ensembl:ENSDARG00000030087 AllianceGenome:ZFIN:ZDB-GENE-070705-529
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb606; sb:cb606; si:dkeyp-110c7.1
Summary: Predicted to be involved in cellular response to lipopolysaccharide. Is expressed in cloaca; liver; peripheral olfactory organ; polster; and pronephric duct. Orthologous to human NFKBIB (NFKB inhibitor beta). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 5

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (37032038..37036929)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (36431885..36436776)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in cellular response to lipopolysaccharide	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: NF-kappa-B inhibitor beta

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001128795.1 → NP_001122267.1 NF-kappa-B inhibitor beta

See identical proteins and their annotated locations for NP_001122267.1

Status: PROVISIONAL

Source sequence(s)

BC163433

UniProtKB/TrEMBL

A0A8M1NI06, B3DJC4

Related

ENSDARP00000045035.4, ENSDART00000045036.7

Conserved Domains (4) summary

cd00204
Location:196 → 326

ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...

pfam12796
Location:206 → 302

Ank_2; Ankyrin repeats (3 copies)

pfam13857
Location:291 → 346

Ank_5; Ankyrin repeats (many copies)

sd00045
Location:235 → 269

ANK; ANK repeat [structural motif]